[Readability] Auto fix setup.py and update-version.py by frozenbugs · Pull Request #4446 · dmlc/dgl

frozenbugs · 2022-08-22T09:15:05Z

Description

Auto fix update-version.py to conform to the PEP 8 style guide.

Checklist

Please feel free to remove inapplicable items for your PR.

The PR title starts with [$CATEGORY] (such as [NN], [Model], [Doc], [Feature]])
Changes are complete (i.e. I finished coding on this PR)
All changes have test coverage
Code is well-documented
To the best of my knowledge, examples are either not affected by this change,
or have been fixed to be compatible with this change
Related issue is referred in this PR
If the PR is for a new model/paper, I've updated the example index here.

Changes

dgl-bot · 2022-08-22T09:15:36Z

To trigger regression tests:

@dgl-bot run [instance-type] [which tests] [compare-with-branch];
For example: @dgl-bot run g4dn.4xlarge all dmlc/master or @dgl-bot run c5.9xlarge kernel,api dmlc/master

dgl-bot · 2022-08-22T10:05:46Z

Commit ID: db05bf4

Build ID: 1

Status: ✅ CI test succeeded

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dgl-bot · 2022-08-22T10:31:37Z

Commit ID: 520dc5e

Build ID: 2

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dgl-bot · 2022-08-24T04:56:17Z

Commit ID: 3393224

Build ID: 3

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BarclayII · 2022-08-30T05:26:37Z

+            libinfo_py,
+            'exec'),
+        libinfo,
+        libinfo)


I noticed that there is a lot of changes that breaks one like into multiple lines. What was the PEP 8 message for this? If the message is "line exceeding 80 characters", note that our limit is 100 characters (https://github.com/dmlc/dgl/blob/master/tests/lint/pylintrc).

This is not only about 80 char or 100 char. The reason we have char limitation is:

It is very hard for human eyes to parse the structure of a long line characters.

Our screen has limited width, so it may break the line at arbitrary place.

To that end, breaking one line into multiple lines give us a more intuitive view about the code structure.

I am also wondering why we choose 100 instead of 80.

Rhett-Ying · 2022-09-04T10:19:57Z

Commit ID: 450f09e

Build ID: 6

Status: ✅ CI test succeeded

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dgl-bot · 2022-09-06T05:03:18Z

Commit ID: 02eda4b5fe7041e86e669f6c76f97a7af8122a0a

Build ID: 7

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… partition pipeline (#4438) * Update distributed-preprocessing.rst * Update Co-authored-by: Ubuntu <ubuntu@ip-172-31-9-26.ap-northeast-1.compute.internal>

* Refactor full graph entity classification * Refactor rgcn with sampling * README update * Update * Results update * Respect default setting of self_loop=false in entity.py * Update * Update README * Update for multi-gpu * Update

* version-1 * version-2 * version-3 * update examples/README * Update .gitignore * update performance in README, delete scripts * 1st approving review * 2nd approving review Co-authored-by: Mufei Li <mufeili1996@gmail.com>

Co-authored-by: Ubuntu <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal> Co-authored-by: Rhett Ying <85214957+Rhett-Ying@users.noreply.github.com>

Co-authored-by: Ubuntu <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal> Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>

* [Example] SEAL for OGBL * update index * update * fix readme typo * add seal sampler * modify set ops * prefetch * efficiency test * update * optimize * fix ScatterAdd dtype issue * update sampler style * update Co-authored-by: Quan Gan <coin2028@hotmail.com>

* [BugFix] fix crash due to incorrect dtype in dgl.to_block() * fix test failure in TF

* Allocate tensors in DGL's current stream * make tensoradaptor stream-aware * replace TAemtpy with cpu allocator * fix typo * try fix cpu allocation * clean header * redirect AllocDataSpace as well * resolve comments

Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>

…/dgl into fix-update-version-py

dgl-bot · 2022-09-09T08:11:26Z

Commit ID: ad043a9d5473acf0f784ddf648882e009fdc033c

Build ID: 8

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dgl-bot · 2022-09-09T08:37:05Z

Commit ID: 30dcc1e51241f5246be75b943444dd9485b3bc88

Build ID: 9

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dgl-bot · 2022-09-09T08:56:25Z

Commit ID: 971adea

Build ID: 10

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dgl-bot · 2022-09-09T09:47:49Z

Commit ID: 9aa02e1

Build ID: 11

Status: ❌ CI test failed in Stage [Torch CPU (Win64) Unit test].

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…/dgl into fix-update-version-py

dgl-bot · 2022-09-14T04:03:03Z

Commit ID: 36052fb

Build ID: 12

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* [Example][Refactor] Refactor graphsage multigpu and full-graph example (#4430) * Add refactors for multi-gpu and full-graph example * Fix format * Update * Update * Update * [Cleanup] Remove async_transferer (#4505) * Remove async_transferer * remove test * Remove AsyncTransferer Co-authored-by: Xin Yao <xiny@nvidia.com> Co-authored-by: Xin Yao <yaox12@outlook.com> * [Cleanup] Remove duplicate entries of CUB submodule (issue# 4395) (#4499) * remove third_part/cub * remove from third_party Co-authored-by: Israt Nisa <nisisrat@amazon.com> Co-authored-by: Xin Yao <xiny@nvidia.com> * [Bug] Enable turn on/off libxsmm at runtime (#4455) * enable turn on/off libxsmm at runtime by adding a global config and related API Co-authored-by: Ubuntu <ubuntu@ip-172-31-19-194.ap-northeast-1.compute.internal> * [Feature] Unify the cuda stream used in core library (#4480) * Use an internal cuda stream for CopyDataFromTo * small fix white space * Fix to compile * Make stream optional in copydata for compile * fix lint issue * Update cub functions to use internal stream * Lint check * Update CopyTo/CopyFrom/CopyFromTo to use internal stream * Address comments * Fix backward CUDA stream * Avoid overloading CopyFromTo() * Minor comment update * Overload copydatafromto in cuda device api Co-authored-by: xiny <xiny@nvidia.com> * [Feature] Added exclude_self and output_batch to knn graph construction (Issues #4323 #4316) (#4389) * * Added "exclude_self" and "output_batch" options to knn_graph and segmented_knn_graph * Updated out-of-date comments on remove_edges and remove_self_loop, since they now preserve batch information * * Changed defaults on new knn_graph and segmented_knn_graph function parameters, for compatibility; pytorch/test_geometry.py was failing * * Added test to ensure dgl.remove_self_loop function correctly updates batch information * * Added new knn_graph and segmented_knn_graph parameters to dgl.nn.KNNGraph and dgl.nn.SegmentedKNNGraph * * Formatting * * Oops, I missed the one in segmented_knn_graph when I fixed the similar thing in knn_graph * * Fixed edge case handling when invalid k specified, since it still needs to be handled consistently for tests to pass * Fixed context of batch info, since it must match the context of the input position data for remove_self_loop to succeed * * Fixed batch info resulting from knn_graph when output_batch is true, for case of 3D input tensor, representing multiple segments * * Added testing of new exclude_self and output_batch parameters on knn_graph and segmented_knn_graph, and their wrappers, KNNGraph and SegmentedKNNGraph, into the test_knn_cuda test * * Added doc comments for new parameters * * Added correct handling for uncommon case of k or more coincident points when excluding self edges in knn_graph and segmented_knn_graph * Added test cases for more than k coincident points * * Updated doc comments for output_batch parameters for clarity * * Linter formatting fixes * * Extracted out common function for test_knn_cpu and test_knn_cuda, to add the new test cases to test_knn_cpu * * Rewording in doc comments * * Removed output_batch parameter from knn_graph and segmented_knn_graph, in favour of always setting the batch information, except in knn_graph if x is a 2D tensor Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com> * [CI] only known devs are authorized to trigger CI (#4518) * [CI] only known devs are authorized to trigger CI * fix if author is null * add comments * [Readability] Auto fix setup.py and update-version.py (#4446) * Auto fix update-version * Auto fix setup.py * Auto fix update-version * Auto fix setup.py * [Doc] Change random.py to random_partition.py in guide on distributed partition pipeline (#4438) * Update distributed-preprocessing.rst * Update Co-authored-by: Ubuntu <ubuntu@ip-172-31-9-26.ap-northeast-1.compute.internal> * fix unpinning when tensoradaptor is not available (#4450) * [Doc] fix print issue in tutorial (#4459) * [Example][Refactor] Refactor RGCN example (#4327) * Refactor full graph entity classification * Refactor rgcn with sampling * README update * Update * Results update * Respect default setting of self_loop=false in entity.py * Update * Update README * Update for multi-gpu * Update * [doc] fix invalid link in user guide (#4468) * [Example] directional_GSN for ogbg-molpcba (#4405) * version-1 * version-2 * version-3 * update examples/README * Update .gitignore * update performance in README, delete scripts * 1st approving review * 2nd approving review Co-authored-by: Mufei Li <mufeili1996@gmail.com> * Clarify the message name, which is 'm'. (#4462) Co-authored-by: Ubuntu <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal> Co-authored-by: Rhett Ying <85214957+Rhett-Ying@users.noreply.github.com> * [Refactor] Auto fix view.py. (#4461) Co-authored-by: Ubuntu <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal> Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com> * [Example] SEAL for OGBL (#4291) * [Example] SEAL for OGBL * update index * update * fix readme typo * add seal sampler * modify set ops * prefetch * efficiency test * update * optimize * fix ScatterAdd dtype issue * update sampler style * update Co-authored-by: Quan Gan <coin2028@hotmail.com> * [CI] use https instead of http (#4488) * [BugFix] fix crash due to incorrect dtype in dgl.to_block() (#4487) * [BugFix] fix crash due to incorrect dtype in dgl.to_block() * fix test failure in TF * [Feature] Make TensorAdapter Stream Aware (#4472) * Allocate tensors in DGL's current stream * make tensoradaptor stream-aware * replace TAemtpy with cpu allocator * fix typo * try fix cpu allocation * clean header * redirect AllocDataSpace as well * resolve comments * [Build][Doc] Specify the sphinx version (#4465) Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com> * reformat * reformat * Auto fix update-version * Auto fix setup.py * reformat * reformat Co-authored-by: Ubuntu <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal> Co-authored-by: Rhett Ying <85214957+Rhett-Ying@users.noreply.github.com> Co-authored-by: Mufei Li <mufeili1996@gmail.com> Co-authored-by: Ubuntu <ubuntu@ip-172-31-9-26.ap-northeast-1.compute.internal> Co-authored-by: Xin Yao <xiny@nvidia.com> Co-authored-by: Chang Liu <chang.liu@utexas.edu> Co-authored-by: Zhiteng Li <55398076+ZHITENGLI@users.noreply.github.com> Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com> Co-authored-by: rudongyu <ru_dongyu@outlook.com> Co-authored-by: Quan Gan <coin2028@hotmail.com> * Move mock version of dgl_sparse library to DGL main repo (#4524) * init * Add api doc for sparse library * support op btwn matrices with differnt sparsity * Fixed docstring * addresses comments * lint check * change keyword format to fmt Co-authored-by: Israt Nisa <nisisrat@amazon.com> * [DistPart] expose timeout config for process group (#4532) * [DistPart] expose timeout config for process group * refine code * Update tools/distpartitioning/data_proc_pipeline.py Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com> Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com> * [Feature] Import PyTorch's CUDA stream management (#4503) * add set_stream * add .record_stream for NDArray and HeteroGraph * refactor dgl stream Python APIs * test record_stream * add unit test for record stream * use pytorch's stream * fix lint * fix cpu build * address comments * address comments * add record stream tests for dgl.graph * record frames and update dataloder * add docstring * update frame * add backend check for record_stream * remove CUDAThreadEntry::stream * record stream for newly created formats * fix bug * fix cpp test * fix None c_void_p to c_handle * [examples]educe memory consumption (#4558) * [examples]educe memory consumption * reffine help message * refine * [Feature][REVIEW] Enable DGL cugaph nightly CI (#4525) * Added cugraph nightly scripts * Removed nvcr.io//nvidia/pytorch:22.04-py3 reference Co-authored-by: Rhett Ying <85214957+Rhett-Ying@users.noreply.github.com> * Revert "[Feature][REVIEW] Enable DGL cugaph nightly CI (#4525)" (#4563) This reverts commit ec171c6. * [Misc] Add flake8 lint workflow. (#4566) * Add pyproject.toml for autopep8. * Add pyproject.toml for autopep8. * Add flake8 annotation in workflow. * remove * add * clean up Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal> * [Misc] Try use official pylint workflow. (#4568) * polish update_version * update pylint workflow. * add * revert. Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal> * [CI] refine stage logic (#4565) * [CI] refine stage logic * refine * refine * remove (#4570) Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal> * Add Pylint workflow for flake8. (#4571) * remove * Add pylint. Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal> * [Misc] Update the python version in Pylint workflow for flake8. (#4572) * remove * Add pylint. * Change the python version for pylint. Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal> * Update pylint. (#4574) Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal> * [Misc] Use another workflow. (#4575) * Update pylint. * Use another workflow. Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal> * Update pylint. (#4576) Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal> * Update pylint.yml * Update pylint.yml * Delete pylint.yml * [Misc]Add pyproject.toml for autopep8 & black. (#4543) * Add pyproject.toml for autopep8. * Add pyproject.toml for autopep8. Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal> * [Feature] Bump DLPack to v0.7 and decouple DLPack from the core library (#4454) * rename `DLContext` to `DGLContext` * rename `kDLGPU` to `kDLCUDA` * replace DLTensor with DGLArray * fix linting * Unify DGLType and DLDataType to DGLDataType * Fix FFI * rename DLDeviceType to DGLDeviceType * decouple dlpack from the core library * fix bug * fix lint * fix merge * fix build * address comments * rename dl_converter to dlpack_convert * remove redundant comments Co-authored-by: Chang Liu <chang.liu@utexas.edu> Co-authored-by: nv-dlasalle <63612878+nv-dlasalle@users.noreply.github.com> Co-authored-by: Xin Yao <xiny@nvidia.com> Co-authored-by: Xin Yao <yaox12@outlook.com> Co-authored-by: Israt Nisa <neesha295@gmail.com> Co-authored-by: Israt Nisa <nisisrat@amazon.com> Co-authored-by: peizhou001 <110809584+peizhou001@users.noreply.github.com> Co-authored-by: Ubuntu <ubuntu@ip-172-31-19-194.ap-northeast-1.compute.internal> Co-authored-by: ndickson-nvidia <99772994+ndickson-nvidia@users.noreply.github.com> Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com> Co-authored-by: Rhett Ying <85214957+Rhett-Ying@users.noreply.github.com> Co-authored-by: Hongzhi (Steve), Chen <chenhongzhi.nkcs@gmail.com> Co-authored-by: Ubuntu <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal> Co-authored-by: Ubuntu <ubuntu@ip-172-31-9-26.ap-northeast-1.compute.internal> Co-authored-by: Zhiteng Li <55398076+ZHITENGLI@users.noreply.github.com> Co-authored-by: rudongyu <ru_dongyu@outlook.com> Co-authored-by: Quan Gan <coin2028@hotmail.com> Co-authored-by: Vibhu Jawa <vibhujawa@gmail.com>

* Auto fix update-version * Auto fix setup.py * Auto fix update-version * Auto fix setup.py * [Doc] Change random.py to random_partition.py in guide on distributed partition pipeline (dmlc#4438) * Update distributed-preprocessing.rst * Update Co-authored-by: Ubuntu <ubuntu@ip-172-31-9-26.ap-northeast-1.compute.internal> * fix unpinning when tensoradaptor is not available (dmlc#4450) * [Doc] fix print issue in tutorial (dmlc#4459) * [Example][Refactor] Refactor RGCN example (dmlc#4327) * Refactor full graph entity classification * Refactor rgcn with sampling * README update * Update * Results update * Respect default setting of self_loop=false in entity.py * Update * Update README * Update for multi-gpu * Update * [doc] fix invalid link in user guide (dmlc#4468) * [Example] directional_GSN for ogbg-molpcba (dmlc#4405) * version-1 * version-2 * version-3 * update examples/README * Update .gitignore * update performance in README, delete scripts * 1st approving review * 2nd approving review Co-authored-by: Mufei Li <mufeili1996@gmail.com> * Clarify the message name, which is 'm'. (dmlc#4462) Co-authored-by: Ubuntu <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal> Co-authored-by: Rhett Ying <85214957+Rhett-Ying@users.noreply.github.com> * [Refactor] Auto fix view.py. (dmlc#4461) Co-authored-by: Ubuntu <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal> Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com> * [Example] SEAL for OGBL (dmlc#4291) * [Example] SEAL for OGBL * update index * update * fix readme typo * add seal sampler * modify set ops * prefetch * efficiency test * update * optimize * fix ScatterAdd dtype issue * update sampler style * update Co-authored-by: Quan Gan <coin2028@hotmail.com> * [CI] use https instead of http (dmlc#4488) * [BugFix] fix crash due to incorrect dtype in dgl.to_block() (dmlc#4487) * [BugFix] fix crash due to incorrect dtype in dgl.to_block() * fix test failure in TF * [Feature] Make TensorAdapter Stream Aware (dmlc#4472) * Allocate tensors in DGL's current stream * make tensoradaptor stream-aware * replace TAemtpy with cpu allocator * fix typo * try fix cpu allocation * clean header * redirect AllocDataSpace as well * resolve comments * [Build][Doc] Specify the sphinx version (dmlc#4465) Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com> * reformat * reformat * Auto fix update-version * Auto fix setup.py * reformat * reformat Co-authored-by: Ubuntu <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal> Co-authored-by: Rhett Ying <85214957+Rhett-Ying@users.noreply.github.com> Co-authored-by: Mufei Li <mufeili1996@gmail.com> Co-authored-by: Ubuntu <ubuntu@ip-172-31-9-26.ap-northeast-1.compute.internal> Co-authored-by: Xin Yao <xiny@nvidia.com> Co-authored-by: Chang Liu <chang.liu@utexas.edu> Co-authored-by: Zhiteng Li <55398076+ZHITENGLI@users.noreply.github.com> Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com> Co-authored-by: rudongyu <ru_dongyu@outlook.com> Co-authored-by: Quan Gan <coin2028@hotmail.com>

* Update from master (#4584) * [Example][Refactor] Refactor graphsage multigpu and full-graph example (#4430) * Add refactors for multi-gpu and full-graph example * Fix format * Update * Update * Update * [Cleanup] Remove async_transferer (#4505) * Remove async_transferer * remove test * Remove AsyncTransferer Co-authored-by: Xin Yao <xiny@nvidia.com> Co-authored-by: Xin Yao <yaox12@outlook.com> * [Cleanup] Remove duplicate entries of CUB submodule (issue# 4395) (#4499) * remove third_part/cub * remove from third_party Co-authored-by: Israt Nisa <nisisrat@amazon.com> Co-authored-by: Xin Yao <xiny@nvidia.com> * [Bug] Enable turn on/off libxsmm at runtime (#4455) * enable turn on/off libxsmm at runtime by adding a global config and related API Co-authored-by: Ubuntu <ubuntu@ip-172-31-19-194.ap-northeast-1.compute.internal> * [Feature] Unify the cuda stream used in core library (#4480) * Use an internal cuda stream for CopyDataFromTo * small fix white space * Fix to compile * Make stream optional in copydata for compile * fix lint issue * Update cub functions to use internal stream * Lint check * Update CopyTo/CopyFrom/CopyFromTo to use internal stream * Address comments * Fix backward CUDA stream * Avoid overloading CopyFromTo() * Minor comment update * Overload copydatafromto in cuda device api Co-authored-by: xiny <xiny@nvidia.com> * [Feature] Added exclude_self and output_batch to knn graph construction (Issues #4323 #4316) (#4389) * * Added "exclude_self" and "output_batch" options to knn_graph and segmented_knn_graph * Updated out-of-date comments on remove_edges and remove_self_loop, since they now preserve batch information * * Changed defaults on new knn_graph and segmented_knn_graph function parameters, for compatibility; pytorch/test_geometry.py was failing * * Added test to ensure dgl.remove_self_loop function correctly updates batch information * * Added new knn_graph and segmented_knn_graph parameters to dgl.nn.KNNGraph and dgl.nn.SegmentedKNNGraph * * Formatting * * Oops, I missed the one in segmented_knn_graph when I fixed the similar thing in knn_graph * * Fixed edge case handling when invalid k specified, since it still needs to be handled consistently for tests to pass * Fixed context of batch info, since it must match the context of the input position data for remove_self_loop to succeed * * Fixed batch info resulting from knn_graph when output_batch is true, for case of 3D input tensor, representing multiple segments * * Added testing of new exclude_self and output_batch parameters on knn_graph and segmented_knn_graph, and their wrappers, KNNGraph and SegmentedKNNGraph, into the test_knn_cuda test * * Added doc comments for new parameters * * Added correct handling for uncommon case of k or more coincident points when excluding self edges in knn_graph and segmented_knn_graph * Added test cases for more than k coincident points * * Updated doc comments for output_batch parameters for clarity * * Linter formatting fixes * * Extracted out common function for test_knn_cpu and test_knn_cuda, to add the new test cases to test_knn_cpu * * Rewording in doc comments * * Removed output_batch parameter from knn_graph and segmented_knn_graph, in favour of always setting the batch information, except in knn_graph if x is a 2D tensor Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com> * [CI] only known devs are authorized to trigger CI (#4518) * [CI] only known devs are authorized to trigger CI * fix if author is null * add comments * [Readability] Auto fix setup.py and update-version.py (#4446) * Auto fix update-version * Auto fix setup.py * Auto fix update-version * Auto fix setup.py * [Doc] Change random.py to random_partition.py in guide on distributed partition pipeline (#4438) * Update distributed-preprocessing.rst * Update Co-authored-by: Ubuntu <ubuntu@ip-172-31-9-26.ap-northeast-1.compute.internal> * fix unpinning when tensoradaptor is not available (#4450) * [Doc] fix print issue in tutorial (#4459) * [Example][Refactor] Refactor RGCN example (#4327) * Refactor full graph entity classification * Refactor rgcn with sampling * README update * Update * Results update * Respect default setting of self_loop=false in entity.py * Update * Update README * Update for multi-gpu * Update * [doc] fix invalid link in user guide (#4468) * [Example] directional_GSN for ogbg-molpcba (#4405) * version-1 * version-2 * version-3 * update examples/README * Update .gitignore * update performance in README, delete scripts * 1st approving review * 2nd approving review Co-authored-by: Mufei Li <mufeili1996@gmail.com> * Clarify the message name, which is 'm'. (#4462) Co-authored-by: Ubuntu <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal> Co-authored-by: Rhett Ying <85214957+Rhett-Ying@users.noreply.github.com> * [Refactor] Auto fix view.py. (#4461) Co-authored-by: Ubuntu <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal> Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com> * [Example] SEAL for OGBL (#4291) * [Example] SEAL for OGBL * update index * update * fix readme typo * add seal sampler * modify set ops * prefetch * efficiency test * update * optimize * fix ScatterAdd dtype issue * update sampler style * update Co-authored-by: Quan Gan <coin2028@hotmail.com> * [CI] use https instead of http (#4488) * [BugFix] fix crash due to incorrect dtype in dgl.to_block() (#4487) * [BugFix] fix crash due to incorrect dtype in dgl.to_block() * fix test failure in TF * [Feature] Make TensorAdapter Stream Aware (#4472) * Allocate tensors in DGL's current stream * make tensoradaptor stream-aware * replace TAemtpy with cpu allocator * fix typo * try fix cpu allocation * clean header * redirect AllocDataSpace as well * resolve comments * [Build][Doc] Specify the sphinx version (#4465) Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com> * reformat * reformat * Auto fix update-version * Auto fix setup.py * reformat * reformat Co-authored-by: Ubuntu <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal> Co-authored-by: Rhett Ying <85214957+Rhett-Ying@users.noreply.github.com> Co-authored-by: Mufei Li <mufeili1996@gmail.com> Co-authored-by: Ubuntu <ubuntu@ip-172-31-9-26.ap-northeast-1.compute.internal> Co-authored-by: Xin Yao <xiny@nvidia.com> Co-authored-by: Chang Liu <chang.liu@utexas.edu> Co-authored-by: Zhiteng Li <55398076+ZHITENGLI@users.noreply.github.com> Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com> Co-authored-by: rudongyu <ru_dongyu@outlook.com> Co-authored-by: Quan Gan <coin2028@hotmail.com> * Move mock version of dgl_sparse library to DGL main repo (#4524) * init * Add api doc for sparse library * support op btwn matrices with differnt sparsity * Fixed docstring * addresses comments * lint check * change keyword format to fmt Co-authored-by: Israt Nisa <nisisrat@amazon.com> * [DistPart] expose timeout config for process group (#4532) * [DistPart] expose timeout config for process group * refine code * Update tools/distpartitioning/data_proc_pipeline.py Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com> Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com> * [Feature] Import PyTorch's CUDA stream management (#4503) * add set_stream * add .record_stream for NDArray and HeteroGraph * refactor dgl stream Python APIs * test record_stream * add unit test for record stream * use pytorch's stream * fix lint * fix cpu build * address comments * address comments * add record stream tests for dgl.graph * record frames and update dataloder * add docstring * update frame * add backend check for record_stream * remove CUDAThreadEntry::stream * record stream for newly created formats * fix bug * fix cpp test * fix None c_void_p to c_handle * [examples]educe memory consumption (#4558) * [examples]educe memory consumption * reffine help message * refine * [Feature][REVIEW] Enable DGL cugaph nightly CI (#4525) * Added cugraph nightly scripts * Removed nvcr.io//nvidia/pytorch:22.04-py3 reference Co-authored-by: Rhett Ying <85214957+Rhett-Ying@users.noreply.github.com> * Revert "[Feature][REVIEW] Enable DGL cugaph nightly CI (#4525)" (#4563) This reverts commit ec171c6. * [Misc] Add flake8 lint workflow. (#4566) * Add pyproject.toml for autopep8. * Add pyproject.toml for autopep8. * Add flake8 annotation in workflow. * remove * add * clean up Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal> * [Misc] Try use official pylint workflow. (#4568) * polish update_version * update pylint workflow. * add * revert. Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal> * [CI] refine stage logic (#4565) * [CI] refine stage logic * refine * refine * remove (#4570) Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal> * Add Pylint workflow for flake8. (#4571) * remove * Add pylint. Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal> * [Misc] Update the python version in Pylint workflow for flake8. (#4572) * remove * Add pylint. * Change the python version for pylint. Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal> * Update pylint. (#4574) Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal> * [Misc] Use another workflow. (#4575) * Update pylint. * Use another workflow. Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal> * Update pylint. (#4576) Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal> * Update pylint.yml * Update pylint.yml * Delete pylint.yml * [Misc]Add pyproject.toml for autopep8 & black. (#4543) * Add pyproject.toml for autopep8. * Add pyproject.toml for autopep8. Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal> * [Feature] Bump DLPack to v0.7 and decouple DLPack from the core library (#4454) * rename `DLContext` to `DGLContext` * rename `kDLGPU` to `kDLCUDA` * replace DLTensor with DGLArray * fix linting * Unify DGLType and DLDataType to DGLDataType * Fix FFI * rename DLDeviceType to DGLDeviceType * decouple dlpack from the core library * fix bug * fix lint * fix merge * fix build * address comments * rename dl_converter to dlpack_convert * remove redundant comments Co-authored-by: Chang Liu <chang.liu@utexas.edu> Co-authored-by: nv-dlasalle <63612878+nv-dlasalle@users.noreply.github.com> Co-authored-by: Xin Yao <xiny@nvidia.com> Co-authored-by: Xin Yao <yaox12@outlook.com> Co-authored-by: Israt Nisa <neesha295@gmail.com> Co-authored-by: Israt Nisa <nisisrat@amazon.com> Co-authored-by: peizhou001 <110809584+peizhou001@users.noreply.github.com> Co-authored-by: Ubuntu <ubuntu@ip-172-31-19-194.ap-northeast-1.compute.internal> Co-authored-by: ndickson-nvidia <99772994+ndickson-nvidia@users.noreply.github.com> Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com> Co-authored-by: Rhett Ying <85214957+Rhett-Ying@users.noreply.github.com> Co-authored-by: Hongzhi (Steve), Chen <chenhongzhi.nkcs@gmail.com> Co-authored-by: Ubuntu <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal> Co-authored-by: Ubuntu <ubuntu@ip-172-31-9-26.ap-northeast-1.compute.internal> Co-authored-by: Zhiteng Li <55398076+ZHITENGLI@users.noreply.github.com> Co-authored-by: rudongyu <ru_dongyu@outlook.com> Co-authored-by: Quan Gan <coin2028@hotmail.com> Co-authored-by: Vibhu Jawa <vibhujawa@gmail.com> * [Deprecation] Dataset Attributes (#4546) * Update * CI * CI * Update Co-authored-by: Ubuntu <ubuntu@ip-172-31-9-26.ap-northeast-1.compute.internal> * [Example] Bug Fix (#4665) * Update * CI * CI * Update * Update Co-authored-by: Ubuntu <ubuntu@ip-172-31-9-26.ap-northeast-1.compute.internal> * Update Co-authored-by: Chang Liu <chang.liu@utexas.edu> Co-authored-by: nv-dlasalle <63612878+nv-dlasalle@users.noreply.github.com> Co-authored-by: Xin Yao <xiny@nvidia.com> Co-authored-by: Xin Yao <yaox12@outlook.com> Co-authored-by: Israt Nisa <neesha295@gmail.com> Co-authored-by: Israt Nisa <nisisrat@amazon.com> Co-authored-by: peizhou001 <110809584+peizhou001@users.noreply.github.com> Co-authored-by: Ubuntu <ubuntu@ip-172-31-19-194.ap-northeast-1.compute.internal> Co-authored-by: ndickson-nvidia <99772994+ndickson-nvidia@users.noreply.github.com> Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com> Co-authored-by: Rhett Ying <85214957+Rhett-Ying@users.noreply.github.com> Co-authored-by: Hongzhi (Steve), Chen <chenhongzhi.nkcs@gmail.com> Co-authored-by: Ubuntu <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal> Co-authored-by: Ubuntu <ubuntu@ip-172-31-9-26.ap-northeast-1.compute.internal> Co-authored-by: Zhiteng Li <55398076+ZHITENGLI@users.noreply.github.com> Co-authored-by: rudongyu <ru_dongyu@outlook.com> Co-authored-by: Quan Gan <coin2028@hotmail.com> Co-authored-by: Vibhu Jawa <vibhujawa@gmail.com>

* Update from master (#4584) * [Example][Refactor] Refactor graphsage multigpu and full-graph example (#4430) * Add refactors for multi-gpu and full-graph example * Fix format * Update * Update * Update * [Cleanup] Remove async_transferer (#4505) * Remove async_transferer * remove test * Remove AsyncTransferer Co-authored-by: Xin Yao <xiny@nvidia.com> Co-authored-by: Xin Yao <yaox12@outlook.com> * [Cleanup] Remove duplicate entries of CUB submodule (issue# 4395) (#4499) * remove third_part/cub * remove from third_party Co-authored-by: Israt Nisa <nisisrat@amazon.com> Co-authored-by: Xin Yao <xiny@nvidia.com> * [Bug] Enable turn on/off libxsmm at runtime (#4455) * enable turn on/off libxsmm at runtime by adding a global config and related API Co-authored-by: Ubuntu <ubuntu@ip-172-31-19-194.ap-northeast-1.compute.internal> * [Feature] Unify the cuda stream used in core library (#4480) * Use an internal cuda stream for CopyDataFromTo * small fix white space * Fix to compile * Make stream optional in copydata for compile * fix lint issue * Update cub functions to use internal stream * Lint check * Update CopyTo/CopyFrom/CopyFromTo to use internal stream * Address comments * Fix backward CUDA stream * Avoid overloading CopyFromTo() * Minor comment update * Overload copydatafromto in cuda device api Co-authored-by: xiny <xiny@nvidia.com> * [Feature] Added exclude_self and output_batch to knn graph construction (Issues #4323 #4316) (#4389) * * Added "exclude_self" and "output_batch" options to knn_graph and segmented_knn_graph * Updated out-of-date comments on remove_edges and remove_self_loop, since they now preserve batch information * * Changed defaults on new knn_graph and segmented_knn_graph function parameters, for compatibility; pytorch/test_geometry.py was failing * * Added test to ensure dgl.remove_self_loop function correctly updates batch information * * Added new knn_graph and segmented_knn_graph parameters to dgl.nn.KNNGraph and dgl.nn.SegmentedKNNGraph * * Formatting * * Oops, I missed the one in segmented_knn_graph when I fixed the similar thing in knn_graph * * Fixed edge case handling when invalid k specified, since it still needs to be handled consistently for tests to pass * Fixed context of batch info, since it must match the context of the input position data for remove_self_loop to succeed * * Fixed batch info resulting from knn_graph when output_batch is true, for case of 3D input tensor, representing multiple segments * * Added testing of new exclude_self and output_batch parameters on knn_graph and segmented_knn_graph, and their wrappers, KNNGraph and SegmentedKNNGraph, into the test_knn_cuda test * * Added doc comments for new parameters * * Added correct handling for uncommon case of k or more coincident points when excluding self edges in knn_graph and segmented_knn_graph * Added test cases for more than k coincident points * * Updated doc comments for output_batch parameters for clarity * * Linter formatting fixes * * Extracted out common function for test_knn_cpu and test_knn_cuda, to add the new test cases to test_knn_cpu * * Rewording in doc comments * * Removed output_batch parameter from knn_graph and segmented_knn_graph, in favour of always setting the batch information, except in knn_graph if x is a 2D tensor Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com> * [CI] only known devs are authorized to trigger CI (#4518) * [CI] only known devs are authorized to trigger CI * fix if author is null * add comments * [Readability] Auto fix setup.py and update-version.py (#4446) * Auto fix update-version * Auto fix setup.py * Auto fix update-version * Auto fix setup.py * [Doc] Change random.py to random_partition.py in guide on distributed partition pipeline (#4438) * Update distributed-preprocessing.rst * Update Co-authored-by: Ubuntu <ubuntu@ip-172-31-9-26.ap-northeast-1.compute.internal> * fix unpinning when tensoradaptor is not available (#4450) * [Doc] fix print issue in tutorial (#4459) * [Example][Refactor] Refactor RGCN example (#4327) * Refactor full graph entity classification * Refactor rgcn with sampling * README update * Update * Results update * Respect default setting of self_loop=false in entity.py * Update * Update README * Update for multi-gpu * Update * [doc] fix invalid link in user guide (#4468) * [Example] directional_GSN for ogbg-molpcba (#4405) * version-1 * version-2 * version-3 * update examples/README * Update .gitignore * update performance in README, delete scripts * 1st approving review * 2nd approving review Co-authored-by: Mufei Li <mufeili1996@gmail.com> * Clarify the message name, which is 'm'. (#4462) Co-authored-by: Ubuntu <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal> Co-authored-by: Rhett Ying <85214957+Rhett-Ying@users.noreply.github.com> * [Refactor] Auto fix view.py. (#4461) Co-authored-by: Ubuntu <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal> Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com> * [Example] SEAL for OGBL (#4291) * [Example] SEAL for OGBL * update index * update * fix readme typo * add seal sampler * modify set ops * prefetch * efficiency test * update * optimize * fix ScatterAdd dtype issue * update sampler style * update Co-authored-by: Quan Gan <coin2028@hotmail.com> * [CI] use https instead of http (#4488) * [BugFix] fix crash due to incorrect dtype in dgl.to_block() (#4487) * [BugFix] fix crash due to incorrect dtype in dgl.to_block() * fix test failure in TF * [Feature] Make TensorAdapter Stream Aware (#4472) * Allocate tensors in DGL's current stream * make tensoradaptor stream-aware * replace TAemtpy with cpu allocator * fix typo * try fix cpu allocation * clean header * redirect AllocDataSpace as well * resolve comments * [Build][Doc] Specify the sphinx version (#4465) Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com> * reformat * reformat * Auto fix update-version * Auto fix setup.py * reformat * reformat Co-authored-by: Ubuntu <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal> Co-authored-by: Rhett Ying <85214957+Rhett-Ying@users.noreply.github.com> Co-authored-by: Mufei Li <mufeili1996@gmail.com> Co-authored-by: Ubuntu <ubuntu@ip-172-31-9-26.ap-northeast-1.compute.internal> Co-authored-by: Xin Yao <xiny@nvidia.com> Co-authored-by: Chang Liu <chang.liu@utexas.edu> Co-authored-by: Zhiteng Li <55398076+ZHITENGLI@users.noreply.github.com> Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com> Co-authored-by: rudongyu <ru_dongyu@outlook.com> Co-authored-by: Quan Gan <coin2028@hotmail.com> * Move mock version of dgl_sparse library to DGL main repo (#4524) * init * Add api doc for sparse library * support op btwn matrices with differnt sparsity * Fixed docstring * addresses comments * lint check * change keyword format to fmt Co-authored-by: Israt Nisa <nisisrat@amazon.com> * [DistPart] expose timeout config for process group (#4532) * [DistPart] expose timeout config for process group * refine code * Update tools/distpartitioning/data_proc_pipeline.py Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com> Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com> * [Feature] Import PyTorch's CUDA stream management (#4503) * add set_stream * add .record_stream for NDArray and HeteroGraph * refactor dgl stream Python APIs * test record_stream * add unit test for record stream * use pytorch's stream * fix lint * fix cpu build * address comments * address comments * add record stream tests for dgl.graph * record frames and update dataloder * add docstring * update frame * add backend check for record_stream * remove CUDAThreadEntry::stream * record stream for newly created formats * fix bug * fix cpp test * fix None c_void_p to c_handle * [examples]educe memory consumption (#4558) * [examples]educe memory consumption * reffine help message * refine * [Feature][REVIEW] Enable DGL cugaph nightly CI (#4525) * Added cugraph nightly scripts * Removed nvcr.io//nvidia/pytorch:22.04-py3 reference Co-authored-by: Rhett Ying <85214957+Rhett-Ying@users.noreply.github.com> * Revert "[Feature][REVIEW] Enable DGL cugaph nightly CI (#4525)" (#4563) This reverts commit ec171c6. * [Misc] Add flake8 lint workflow. (#4566) * Add pyproject.toml for autopep8. * Add pyproject.toml for autopep8. * Add flake8 annotation in workflow. * remove * add * clean up Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal> * [Misc] Try use official pylint workflow. (#4568) * polish update_version * update pylint workflow. * add * revert. Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal> * [CI] refine stage logic (#4565) * [CI] refine stage logic * refine * refine * remove (#4570) Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal> * Add Pylint workflow for flake8. (#4571) * remove * Add pylint. Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal> * [Misc] Update the python version in Pylint workflow for flake8. (#4572) * remove * Add pylint. * Change the python version for pylint. Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal> * Update pylint. (#4574) Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal> * [Misc] Use another workflow. (#4575) * Update pylint. * Use another workflow. Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal> * Update pylint. (#4576) Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal> * Update pylint.yml * Update pylint.yml * Delete pylint.yml * [Misc]Add pyproject.toml for autopep8 & black. (#4543) * Add pyproject.toml for autopep8. * Add pyproject.toml for autopep8. Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal> * [Feature] Bump DLPack to v0.7 and decouple DLPack from the core library (#4454) * rename `DLContext` to `DGLContext` * rename `kDLGPU` to `kDLCUDA` * replace DLTensor with DGLArray * fix linting * Unify DGLType and DLDataType to DGLDataType * Fix FFI * rename DLDeviceType to DGLDeviceType * decouple dlpack from the core library * fix bug * fix lint * fix merge * fix build * address comments * rename dl_converter to dlpack_convert * remove redundant comments Co-authored-by: Chang Liu <chang.liu@utexas.edu> Co-authored-by: nv-dlasalle <63612878+nv-dlasalle@users.noreply.github.com> Co-authored-by: Xin Yao <xiny@nvidia.com> Co-authored-by: Xin Yao <yaox12@outlook.com> Co-authored-by: Israt Nisa <neesha295@gmail.com> Co-authored-by: Israt Nisa <nisisrat@amazon.com> Co-authored-by: peizhou001 <110809584+peizhou001@users.noreply.github.com> Co-authored-by: Ubuntu <ubuntu@ip-172-31-19-194.ap-northeast-1.compute.internal> Co-authored-by: ndickson-nvidia <99772994+ndickson-nvidia@users.noreply.github.com> Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com> Co-authored-by: Rhett Ying <85214957+Rhett-Ying@users.noreply.github.com> Co-authored-by: Hongzhi (Steve), Chen <chenhongzhi.nkcs@gmail.com> Co-authored-by: Ubuntu <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal> Co-authored-by: Ubuntu <ubuntu@ip-172-31-9-26.ap-northeast-1.compute.internal> Co-authored-by: Zhiteng Li <55398076+ZHITENGLI@users.noreply.github.com> Co-authored-by: rudongyu <ru_dongyu@outlook.com> Co-authored-by: Quan Gan <coin2028@hotmail.com> Co-authored-by: Vibhu Jawa <vibhujawa@gmail.com> * [Deprecation] Dataset Attributes (#4546) * Update * CI * CI * Update Co-authored-by: Ubuntu <ubuntu@ip-172-31-9-26.ap-northeast-1.compute.internal> * [Example] Bug Fix (#4665) * Update * CI * CI * Update * Update Co-authored-by: Ubuntu <ubuntu@ip-172-31-9-26.ap-northeast-1.compute.internal> * Update * Update (#4724) Co-authored-by: Ubuntu <ubuntu@ip-172-31-9-26.ap-northeast-1.compute.internal> Co-authored-by: Chang Liu <chang.liu@utexas.edu> Co-authored-by: nv-dlasalle <63612878+nv-dlasalle@users.noreply.github.com> Co-authored-by: Xin Yao <xiny@nvidia.com> Co-authored-by: Xin Yao <yaox12@outlook.com> Co-authored-by: Israt Nisa <neesha295@gmail.com> Co-authored-by: Israt Nisa <nisisrat@amazon.com> Co-authored-by: peizhou001 <110809584+peizhou001@users.noreply.github.com> Co-authored-by: Ubuntu <ubuntu@ip-172-31-19-194.ap-northeast-1.compute.internal> Co-authored-by: ndickson-nvidia <99772994+ndickson-nvidia@users.noreply.github.com> Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com> Co-authored-by: Rhett Ying <85214957+Rhett-Ying@users.noreply.github.com> Co-authored-by: Hongzhi (Steve), Chen <chenhongzhi.nkcs@gmail.com> Co-authored-by: Ubuntu <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal> Co-authored-by: Ubuntu <ubuntu@ip-172-31-9-26.ap-northeast-1.compute.internal> Co-authored-by: Zhiteng Li <55398076+ZHITENGLI@users.noreply.github.com> Co-authored-by: rudongyu <ru_dongyu@outlook.com> Co-authored-by: Quan Gan <coin2028@hotmail.com> Co-authored-by: Vibhu Jawa <vibhujawa@gmail.com>

* Update from master (#4584) * [Example][Refactor] Refactor graphsage multigpu and full-graph example (#4430) * Add refactors for multi-gpu and full-graph example * Fix format * Update * Update * Update * [Cleanup] Remove async_transferer (#4505) * Remove async_transferer * remove test * Remove AsyncTransferer Co-authored-by: Xin Yao <xiny@nvidia.com> Co-authored-by: Xin Yao <yaox12@outlook.com> * [Cleanup] Remove duplicate entries of CUB submodule (issue# 4395) (#4499) * remove third_part/cub * remove from third_party Co-authored-by: Israt Nisa <nisisrat@amazon.com> Co-authored-by: Xin Yao <xiny@nvidia.com> * [Bug] Enable turn on/off libxsmm at runtime (#4455) * enable turn on/off libxsmm at runtime by adding a global config and related API Co-authored-by: Ubuntu <ubuntu@ip-172-31-19-194.ap-northeast-1.compute.internal> * [Feature] Unify the cuda stream used in core library (#4480) * Use an internal cuda stream for CopyDataFromTo * small fix white space * Fix to compile * Make stream optional in copydata for compile * fix lint issue * Update cub functions to use internal stream * Lint check * Update CopyTo/CopyFrom/CopyFromTo to use internal stream * Address comments * Fix backward CUDA stream * Avoid overloading CopyFromTo() * Minor comment update * Overload copydatafromto in cuda device api Co-authored-by: xiny <xiny@nvidia.com> * [Feature] Added exclude_self and output_batch to knn graph construction (Issues #4323 #4316) (#4389) * * Added "exclude_self" and "output_batch" options to knn_graph and segmented_knn_graph * Updated out-of-date comments on remove_edges and remove_self_loop, since they now preserve batch information * * Changed defaults on new knn_graph and segmented_knn_graph function parameters, for compatibility; pytorch/test_geometry.py was failing * * Added test to ensure dgl.remove_self_loop function correctly updates batch information * * Added new knn_graph and segmented_knn_graph parameters to dgl.nn.KNNGraph and dgl.nn.SegmentedKNNGraph * * Formatting * * Oops, I missed the one in segmented_knn_graph when I fixed the similar thing in knn_graph * * Fixed edge case handling when invalid k specified, since it still needs to be handled consistently for tests to pass * Fixed context of batch info, since it must match the context of the input position data for remove_self_loop to succeed * * Fixed batch info resulting from knn_graph when output_batch is true, for case of 3D input tensor, representing multiple segments * * Added testing of new exclude_self and output_batch parameters on knn_graph and segmented_knn_graph, and their wrappers, KNNGraph and SegmentedKNNGraph, into the test_knn_cuda test * * Added doc comments for new parameters * * Added correct handling for uncommon case of k or more coincident points when excluding self edges in knn_graph and segmented_knn_graph * Added test cases for more than k coincident points * * Updated doc comments for output_batch parameters for clarity * * Linter formatting fixes * * Extracted out common function for test_knn_cpu and test_knn_cuda, to add the new test cases to test_knn_cpu * * Rewording in doc comments * * Removed output_batch parameter from knn_graph and segmented_knn_graph, in favour of always setting the batch information, except in knn_graph if x is a 2D tensor Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com> * [CI] only known devs are authorized to trigger CI (#4518) * [CI] only known devs are authorized to trigger CI * fix if author is null * add comments * [Readability] Auto fix setup.py and update-version.py (#4446) * Auto fix update-version * Auto fix setup.py * Auto fix update-version * Auto fix setup.py * [Doc] Change random.py to random_partition.py in guide on distributed partition pipeline (#4438) * Update distributed-preprocessing.rst * Update Co-authored-by: Ubuntu <ubuntu@ip-172-31-9-26.ap-northeast-1.compute.internal> * fix unpinning when tensoradaptor is not available (#4450) * [Doc] fix print issue in tutorial (#4459) * [Example][Refactor] Refactor RGCN example (#4327) * Refactor full graph entity classification * Refactor rgcn with sampling * README update * Update * Results update * Respect default setting of self_loop=false in entity.py * Update * Update README * Update for multi-gpu * Update * [doc] fix invalid link in user guide (#4468) * [Example] directional_GSN for ogbg-molpcba (#4405) * version-1 * version-2 * version-3 * update examples/README * Update .gitignore * update performance in README, delete scripts * 1st approving review * 2nd approving review Co-authored-by: Mufei Li <mufeili1996@gmail.com> * Clarify the message name, which is 'm'. (#4462) Co-authored-by: Ubuntu <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal> Co-authored-by: Rhett Ying <85214957+Rhett-Ying@users.noreply.github.com> * [Refactor] Auto fix view.py. (#4461) Co-authored-by: Ubuntu <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal> Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com> * [Example] SEAL for OGBL (#4291) * [Example] SEAL for OGBL * update index * update * fix readme typo * add seal sampler * modify set ops * prefetch * efficiency test * update * optimize * fix ScatterAdd dtype issue * update sampler style * update Co-authored-by: Quan Gan <coin2028@hotmail.com> * [CI] use https instead of http (#4488) * [BugFix] fix crash due to incorrect dtype in dgl.to_block() (#4487) * [BugFix] fix crash due to incorrect dtype in dgl.to_block() * fix test failure in TF * [Feature] Make TensorAdapter Stream Aware (#4472) * Allocate tensors in DGL's current stream * make tensoradaptor stream-aware * replace TAemtpy with cpu allocator * fix typo * try fix cpu allocation * clean header * redirect AllocDataSpace as well * resolve comments * [Build][Doc] Specify the sphinx version (#4465) Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com> * reformat * reformat * Auto fix update-version * Auto fix setup.py * reformat * reformat Co-authored-by: Ubuntu <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal> Co-authored-by: Rhett Ying <85214957+Rhett-Ying@users.noreply.github.com> Co-authored-by: Mufei Li <mufeili1996@gmail.com> Co-authored-by: Ubuntu <ubuntu@ip-172-31-9-26.ap-northeast-1.compute.internal> Co-authored-by: Xin Yao <xiny@nvidia.com> Co-authored-by: Chang Liu <chang.liu@utexas.edu> Co-authored-by: Zhiteng Li <55398076+ZHITENGLI@users.noreply.github.com> Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com> Co-authored-by: rudongyu <ru_dongyu@outlook.com> Co-authored-by: Quan Gan <coin2028@hotmail.com> * Move mock version of dgl_sparse library to DGL main repo (#4524) * init * Add api doc for sparse library * support op btwn matrices with differnt sparsity * Fixed docstring * addresses comments * lint check * change keyword format to fmt Co-authored-by: Israt Nisa <nisisrat@amazon.com> * [DistPart] expose timeout config for process group (#4532) * [DistPart] expose timeout config for process group * refine code * Update tools/distpartitioning/data_proc_pipeline.py Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com> Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com> * [Feature] Import PyTorch's CUDA stream management (#4503) * add set_stream * add .record_stream for NDArray and HeteroGraph * refactor dgl stream Python APIs * test record_stream * add unit test for record stream * use pytorch's stream * fix lint * fix cpu build * address comments * address comments * add record stream tests for dgl.graph * record frames and update dataloder * add docstring * update frame * add backend check for record_stream * remove CUDAThreadEntry::stream * record stream for newly created formats * fix bug * fix cpp test * fix None c_void_p to c_handle * [examples]educe memory consumption (#4558) * [examples]educe memory consumption * reffine help message * refine * [Feature][REVIEW] Enable DGL cugaph nightly CI (#4525) * Added cugraph nightly scripts * Removed nvcr.io//nvidia/pytorch:22.04-py3 reference Co-authored-by: Rhett Ying <85214957+Rhett-Ying@users.noreply.github.com> * Revert "[Feature][REVIEW] Enable DGL cugaph nightly CI (#4525)" (#4563) This reverts commit ec171c6. * [Misc] Add flake8 lint workflow. (#4566) * Add pyproject.toml for autopep8. * Add pyproject.toml for autopep8. * Add flake8 annotation in workflow. * remove * add * clean up Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal> * [Misc] Try use official pylint workflow. (#4568) * polish update_version * update pylint workflow. * add * revert. Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal> * [CI] refine stage logic (#4565) * [CI] refine stage logic * refine * refine * remove (#4570) Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal> * Add Pylint workflow for flake8. (#4571) * remove * Add pylint. Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal> * [Misc] Update the python version in Pylint workflow for flake8. (#4572) * remove * Add pylint. * Change the python version for pylint. Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal> * Update pylint. (#4574) Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal> * [Misc] Use another workflow. (#4575) * Update pylint. * Use another workflow. Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal> * Update pylint. (#4576) Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal> * Update pylint.yml * Update pylint.yml * Delete pylint.yml * [Misc]Add pyproject.toml for autopep8 & black. (#4543) * Add pyproject.toml for autopep8. * Add pyproject.toml for autopep8. Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal> * [Feature] Bump DLPack to v0.7 and decouple DLPack from the core library (#4454) * rename `DLContext` to `DGLContext` * rename `kDLGPU` to `kDLCUDA` * replace DLTensor with DGLArray * fix linting * Unify DGLType and DLDataType to DGLDataType * Fix FFI * rename DLDeviceType to DGLDeviceType * decouple dlpack from the core library * fix bug * fix lint * fix merge * fix build * address comments * rename dl_converter to dlpack_convert * remove redundant comments Co-authored-by: Chang Liu <chang.liu@utexas.edu> Co-authored-by: nv-dlasalle <63612878+nv-dlasalle@users.noreply.github.com> Co-authored-by: Xin Yao <xiny@nvidia.com> Co-authored-by: Xin Yao <yaox12@outlook.com> Co-authored-by: Israt Nisa <neesha295@gmail.com> Co-authored-by: Israt Nisa <nisisrat@amazon.com> Co-authored-by: peizhou001 <110809584+peizhou001@users.noreply.github.com> Co-authored-by: Ubuntu <ubuntu@ip-172-31-19-194.ap-northeast-1.compute.internal> Co-authored-by: ndickson-nvidia <99772994+ndickson-nvidia@users.noreply.github.com> Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com> Co-authored-by: Rhett Ying <85214957+Rhett-Ying@users.noreply.github.com> Co-authored-by: Hongzhi (Steve), Chen <chenhongzhi.nkcs@gmail.com> Co-authored-by: Ubuntu <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal> Co-authored-by: Ubuntu <ubuntu@ip-172-31-9-26.ap-northeast-1.compute.internal> Co-authored-by: Zhiteng Li <55398076+ZHITENGLI@users.noreply.github.com> Co-authored-by: rudongyu <ru_dongyu@outlook.com> Co-authored-by: Quan Gan <coin2028@hotmail.com> Co-authored-by: Vibhu Jawa <vibhujawa@gmail.com> * [Deprecation] Dataset Attributes (#4546) * Update * CI * CI * Update Co-authored-by: Ubuntu <ubuntu@ip-172-31-9-26.ap-northeast-1.compute.internal> * [Example] Bug Fix (#4665) * Update * CI * CI * Update * Update Co-authored-by: Ubuntu <ubuntu@ip-172-31-9-26.ap-northeast-1.compute.internal> * Update * Update (#4724) Co-authored-by: Ubuntu <ubuntu@ip-172-31-9-26.ap-northeast-1.compute.internal> * change DGLHeteroGraph to DGLGraph in DOC * revert c change Co-authored-by: Mufei Li <mufeili1996@gmail.com> Co-authored-by: Chang Liu <chang.liu@utexas.edu> Co-authored-by: nv-dlasalle <63612878+nv-dlasalle@users.noreply.github.com> Co-authored-by: Xin Yao <xiny@nvidia.com> Co-authored-by: Xin Yao <yaox12@outlook.com> Co-authored-by: Israt Nisa <neesha295@gmail.com> Co-authored-by: Israt Nisa <nisisrat@amazon.com> Co-authored-by: Ubuntu <ubuntu@ip-172-31-19-194.ap-northeast-1.compute.internal> Co-authored-by: ndickson-nvidia <99772994+ndickson-nvidia@users.noreply.github.com> Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com> Co-authored-by: Rhett Ying <85214957+Rhett-Ying@users.noreply.github.com> Co-authored-by: Hongzhi (Steve), Chen <chenhongzhi.nkcs@gmail.com> Co-authored-by: Ubuntu <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal> Co-authored-by: Ubuntu <ubuntu@ip-172-31-9-26.ap-northeast-1.compute.internal> Co-authored-by: Zhiteng Li <55398076+ZHITENGLI@users.noreply.github.com> Co-authored-by: rudongyu <ru_dongyu@outlook.com> Co-authored-by: Quan Gan <coin2028@hotmail.com> Co-authored-by: Vibhu Jawa <vibhujawa@gmail.com> Co-authored-by: Ubuntu <ubuntu@ip-172-31-16-19.ap-northeast-1.compute.internal>

* Update from master (#4584) * [Example][Refactor] Refactor graphsage multigpu and full-graph example (#4430) * Add refactors for multi-gpu and full-graph example * Fix format * Update * Update * Update * [Cleanup] Remove async_transferer (#4505) * Remove async_transferer * remove test * Remove AsyncTransferer Co-authored-by: Xin Yao <xiny@nvidia.com> Co-authored-by: Xin Yao <yaox12@outlook.com> * [Cleanup] Remove duplicate entries of CUB submodule (issue# 4395) (#4499) * remove third_part/cub * remove from third_party Co-authored-by: Israt Nisa <nisisrat@amazon.com> Co-authored-by: Xin Yao <xiny@nvidia.com> * [Bug] Enable turn on/off libxsmm at runtime (#4455) * enable turn on/off libxsmm at runtime by adding a global config and related API Co-authored-by: Ubuntu <ubuntu@ip-172-31-19-194.ap-northeast-1.compute.internal> * [Feature] Unify the cuda stream used in core library (#4480) * Use an internal cuda stream for CopyDataFromTo * small fix white space * Fix to compile * Make stream optional in copydata for compile * fix lint issue * Update cub functions to use internal stream * Lint check * Update CopyTo/CopyFrom/CopyFromTo to use internal stream * Address comments * Fix backward CUDA stream * Avoid overloading CopyFromTo() * Minor comment update * Overload copydatafromto in cuda device api Co-authored-by: xiny <xiny@nvidia.com> * [Feature] Added exclude_self and output_batch to knn graph construction (Issues #4323 #4316) (#4389) * * Added "exclude_self" and "output_batch" options to knn_graph and segmented_knn_graph * Updated out-of-date comments on remove_edges and remove_self_loop, since they now preserve batch information * * Changed defaults on new knn_graph and segmented_knn_graph function parameters, for compatibility; pytorch/test_geometry.py was failing * * Added test to ensure dgl.remove_self_loop function correctly updates batch information * * Added new knn_graph and segmented_knn_graph parameters to dgl.nn.KNNGraph and dgl.nn.SegmentedKNNGraph * * Formatting * * Oops, I missed the one in segmented_knn_graph when I fixed the similar thing in knn_graph * * Fixed edge case handling when invalid k specified, since it still needs to be handled consistently for tests to pass * Fixed context of batch info, since it must match the context of the input position data for remove_self_loop to succeed * * Fixed batch info resulting from knn_graph when output_batch is true, for case of 3D input tensor, representing multiple segments * * Added testing of new exclude_self and output_batch parameters on knn_graph and segmented_knn_graph, and their wrappers, KNNGraph and SegmentedKNNGraph, into the test_knn_cuda test * * Added doc comments for new parameters * * Added correct handling for uncommon case of k or more coincident points when excluding self edges in knn_graph and segmented_knn_graph * Added test cases for more than k coincident points * * Updated doc comments for output_batch parameters for clarity * * Linter formatting fixes * * Extracted out common function for test_knn_cpu and test_knn_cuda, to add the new test cases to test_knn_cpu * * Rewording in doc comments * * Removed output_batch parameter from knn_graph and segmented_knn_graph, in favour of always setting the batch information, except in knn_graph if x is a 2D tensor Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com> * [CI] only known devs are authorized to trigger CI (#4518) * [CI] only known devs are authorized to trigger CI * fix if author is null * add comments * [Readability] Auto fix setup.py and update-version.py (#4446) * Auto fix update-version * Auto fix setup.py * Auto fix update-version * Auto fix setup.py * [Doc] Change random.py to random_partition.py in guide on distributed partition pipeline (#4438) * Update distributed-preprocessing.rst * Update Co-authored-by: Ubuntu <ubuntu@ip-172-31-9-26.ap-northeast-1.compute.internal> * fix unpinning when tensoradaptor is not available (#4450) * [Doc] fix print issue in tutorial (#4459) * [Example][Refactor] Refactor RGCN example (#4327) * Refactor full graph entity classification * Refactor rgcn with sampling * README update * Update * Results update * Respect default setting of self_loop=false in entity.py * Update * Update README * Update for multi-gpu * Update * [doc] fix invalid link in user guide (#4468) * [Example] directional_GSN for ogbg-molpcba (#4405) * version-1 * version-2 * version-3 * update examples/README * Update .gitignore * update performance in README, delete scripts * 1st approving review * 2nd approving review Co-authored-by: Mufei Li <mufeili1996@gmail.com> * Clarify the message name, which is 'm'. (#4462) Co-authored-by: Ubuntu <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal> Co-authored-by: Rhett Ying <85214957+Rhett-Ying@users.noreply.github.com> * [Refactor] Auto fix view.py. (#4461) Co-authored-by: Ubuntu <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal> Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com> * [Example] SEAL for OGBL (#4291) * [Example] SEAL for OGBL * update index * update * fix readme typo * add seal sampler * modify set ops * prefetch * efficiency test * update * optimize * fix ScatterAdd dtype issue * update sampler style * update Co-authored-by: Quan Gan <coin2028@hotmail.com> * [CI] use https instead of http (#4488) * [BugFix] fix crash due to incorrect dtype in dgl.to_block() (#4487) * [BugFix] fix crash due to incorrect dtype in dgl.to_block() * fix test failure in TF * [Feature] Make TensorAdapter Stream Aware (#4472) * Allocate tensors in DGL's current stream * make tensoradaptor stream-aware * replace TAemtpy with cpu allocator * fix typo * try fix cpu allocation * clean header * redirect AllocDataSpace as well * resolve comments * [Build][Doc] Specify the sphinx version (#4465) Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com> * reformat * reformat * Auto fix update-version * Auto fix setup.py * reformat * reformat Co-authored-by: Ubuntu <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal> Co-authored-by: Rhett Ying <85214957+Rhett-Ying@users.noreply.github.com> Co-authored-by: Mufei Li <mufeili1996@gmail.com> Co-authored-by: Ubuntu <ubuntu@ip-172-31-9-26.ap-northeast-1.compute.internal> Co-authored-by: Xin Yao <xiny@nvidia.com> Co-authored-by: Chang Liu <chang.liu@utexas.edu> Co-authored-by: Zhiteng Li <55398076+ZHITENGLI@users.noreply.github.com> Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com> Co-authored-by: rudongyu <ru_dongyu@outlook.com> Co-authored-by: Quan Gan <coin2028@hotmail.com> * Move mock version of dgl_sparse library to DGL main repo (#4524) * init * Add api doc for sparse library * support op btwn matrices with differnt sparsity * Fixed docstring * addresses comments * lint check * change keyword format to fmt Co-authored-by: Israt Nisa <nisisrat@amazon.com> * [DistPart] expose timeout config for process group (#4532) * [DistPart] expose timeout config for process group * refine code * Update tools/distpartitioning/data_proc_pipeline.py Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com> Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com> * [Feature] Import PyTorch's CUDA stream management (#4503) * add set_stream * add .record_stream for NDArray and HeteroGraph * refactor dgl stream Python APIs * test record_stream * add unit test for record stream * use pytorch's stream * fix lint * fix cpu build * address comments * address comments * add record stream tests for dgl.graph * record frames and update dataloder * add docstring * update frame * add backend check for record_stream * remove CUDAThreadEntry::stream * record stream for newly created formats * fix bug * fix cpp test * fix None c_void_p to c_handle * [examples]educe memory consumption (#4558) * [examples]educe memory consumption * reffine help message * refine * [Feature][REVIEW] Enable DGL cugaph nightly CI (#4525) * Added cugraph nightly scripts * Removed nvcr.io//nvidia/pytorch:22.04-py3 reference Co-authored-by: Rhett Ying <85214957+Rhett-Ying@users.noreply.github.com> * Revert "[Feature][REVIEW] Enable DGL cugaph nightly CI (#4525)" (#4563) This reverts commit ec171c6. * [Misc] Add flake8 lint workflow. (#4566) * Add pyproject.toml for autopep8. * Add pyproject.toml for autopep8. * Add flake8 annotation in workflow. * remove * add * clean up Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal> * [Misc] Try use official pylint workflow. (#4568) * polish update_version * update pylint workflow. * add * revert. Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal> * [CI] refine stage logic (#4565) * [CI] refine stage logic * refine * refine * remove (#4570) Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal> * Add Pylint workflow for flake8. (#4571) * remove * Add pylint. Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal> * [Misc] Update the python version in Pylint workflow for flake8. (#4572) * remove * Add pylint. * Change the python version for pylint. Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal> * Update pylint. (#4574) Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal> * [Misc] Use another workflow. (#4575) * Update pylint. * Use another workflow. Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal> * Update pylint. (#4576) Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal> * Update pylint.yml * Update pylint.yml * Delete pylint.yml * [Misc]Add pyproject.toml for autopep8 & black. (#4543) * Add pyproject.toml for autopep8. * Add pyproject.toml for autopep8. Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal> * [Feature] Bump DLPack to v0.7 and decouple DLPack from the core library (#4454) * rename `DLContext` to `DGLContext` * rename `kDLGPU` to `kDLCUDA` * replace DLTensor with DGLArray * fix linting * Unify DGLType and DLDataType to DGLDataType * Fix FFI * rename DLDeviceType to DGLDeviceType * decouple dlpack from the core library * fix bug * fix lint * fix merge * fix build * address comments * rename dl_converter to dlpack_convert * remove redundant comments Co-authored-by: Chang Liu <chang.liu@utexas.edu> Co-authored-by: nv-dlasalle <63612878+nv-dlasalle@users.noreply.github.com> Co-authored-by: Xin Yao <xiny@nvidia.com> Co-authored-by: Xin Yao <yaox12@outlook.com> Co-authored-by: Israt Nisa <neesha295@gmail.com> Co-authored-by: Israt Nisa <nisisrat@amazon.com> Co-authored-by: peizhou001 <110809584+peizhou001@users.noreply.github.com> Co-authored-by: Ubuntu <ubuntu@ip-172-31-19-194.ap-northeast-1.compute.internal> Co-authored-by: ndickson-nvidia <99772994+ndickson-nvidia@users.noreply.github.com> Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com> Co-authored-by: Rhett Ying <85214957+Rhett-Ying@users.noreply.github.com> Co-authored-by: Hongzhi (Steve), Chen <chenhongzhi.nkcs@gmail.com> Co-authored-by: Ubuntu <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal> Co-authored-by: Ubuntu <ubuntu@ip-172-31-9-26.ap-northeast-1.compute.internal> Co-authored-by: Zhiteng Li <55398076+ZHITENGLI@users.noreply.github.com> Co-authored-by: rudongyu <ru_dongyu@outlook.com> Co-authored-by: Quan Gan <coin2028@hotmail.com> Co-authored-by: Vibhu Jawa <vibhujawa@gmail.com> * [Deprecation] Dataset Attributes (#4546) * Update * CI * CI * Update Co-authored-by: Ubuntu <ubuntu@ip-172-31-9-26.ap-northeast-1.compute.internal> * [Example] Bug Fix (#4665) * Update * CI * CI * Update * Update Co-authored-by: Ubuntu <ubuntu@ip-172-31-9-26.ap-northeast-1.compute.internal> * Update * Update (#4724) Co-authored-by: Ubuntu <ubuntu@ip-172-31-9-26.ap-northeast-1.compute.internal> * [API Deprecation]Rename DGLHeterpGraph to DGLGraph in Py files (#4835) * rename DGLHeterpGraph to DGLGraph * [Sparse] Add sparse matrix C++ implementation (#4773) * [Sparse] Add sparse matrix C++ implementation * Add documentation * Update * Minor fix * Move Python code to dgl/mock_sparse2 * Move headers to include * lint * Update * Add dgl_sparse directory * Move src code to dgl_sparse * Add __init__.py in tests to avoid naming conflict * Add dgl sparse so in Jenkinsfile * Complete docstring & SparseMatrix basic op * lint * Disable win tests * fix lint issue * [Misc] clang-format auto fix. (#4831) * [Misc] clang-format auto fix. * blabla * nolint * blabla Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal> * [Dist] enable access DistGraph.edges via canonical etype (#4814) * [Dist] enable access DistGraph.edges via canonical etype * refine code * refine test * refine code * Reading files in chunks to reduce the memory footprint of pyarrow (#4795) All tasks completed. * [Dist] Create <graph_name>_stats.txt file if it does not exist before ParMETIS execution (#4791) * check if stats file exists, if not create one before parmetis run * correct the typo error and correctly use constants.GRAPH_NAME * alltoall returns tensor list with None values, which is failing torch.cat(). (#4788) * replace batch_hetero * [Misc] Add // NOLINT for the very long code. (#4834) * alternative * fix * remove_todo * blabl * ablabl Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal> * fix (#4841) Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal> * a better way to init threadlocal prng (#4808) Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com> * [DIST] Message size to retrieve SHUFFLE_GLOBAL_NIDs is resulting in very large messages and resulting in killed process (#4790) * Send out the message to the distributed lookup service in batches. * Update function signature for allgather_sizes function call. * Removed the unnecessary if statement . * Removed logging.info message, which is not needed. * [Misc] Minor code style fix. (#4843) * [Misc] Change the max line length for cpp to 80 in lint. * blabla * blabla * blabla * ablabla Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal> * [Sparse] Lint C++ files (#4845) * [Dist] Fix typo of metis preprocess in dist partitin pipeline * Fix ogb/ogbn-mag/heter-RGCN example (#4839) Co-authored-by: Mufei Li <mufeili1996@gmail.com> * fix issue * [Misc] Update cpplint. (#4844) Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal> Co-authored-by: Ubuntu <ubuntu@ip-172-31-16-19.ap-northeast-1.compute.internal> Co-authored-by: czkkkkkk <zekucai@gmail.com> Co-authored-by: Hongzhi (Steve), Chen <chenhongzhi.nkcs@gmail.com> Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal> Co-authored-by: Rhett Ying <85214957+Rhett-Ying@users.noreply.github.com> Co-authored-by: kylasa <kylasa@gmail.com> Co-authored-by: Muhammed Fatih BALIN <m.f.balin@gmail.com> Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com> Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com> Co-authored-by: Chang Liu <chang.liu@utexas.edu> Co-authored-by: Mufei Li <mufeili1996@gmail.com> * [API Deprecate]Remove as_heterograph and as_immutable_graph (#4851) * Remove batch_hetero and unbatch_hetero * [API Deprecate]Rename DGLHeterpGraph to DGLGraph in python files (#4833) * remove training new line * remove node_attrs and edge_attrs in batch.py (#4890) * [API Deprecation] Remove copy_src,copy_edge,src_mul_edge in dgl.function (#4891) * remove emb_tensor in NodeEmbedding (#4892) * [API Deprecation]Remove 5 APIs in DGLGraph (#4902) * [API Deprecation]Remove APIs in old dgl section in DGLGraph (#4901) * [API Deprecation]Remove adjacency_matrix_scipy and inplace args in candidates (#4895) * [API Deprecation] Remove add_edge in DGLGraph (#4894) * [API Derepcation]Remove __contains__ in DGLGraph (#4937) * [API Deprecation]Remove edge_id() and force_multi argument in edge_ids() (#4896) * fix issue * remove deprecated_kwargs * remove unused import Co-authored-by: Mufei Li <mufeili1996@gmail.com> Co-authored-by: Chang Liu <chang.liu@utexas.edu> Co-authored-by: nv-dlasalle <63612878+nv-dlasalle@users.noreply.github.com> Co-authored-by: Xin Yao <xiny@nvidia.com> Co-authored-by: Xin Yao <yaox12@outlook.com> Co-authored-by: Israt Nisa <neesha295@gmail.com> Co-authored-by: Israt Nisa <nisisrat@amazon.com> Co-authored-by: Ubuntu <ubuntu@ip-172-31-19-194.ap-northeast-1.compute.internal> Co-authored-by: ndickson-nvidia <99772994+ndickson-nvidia@users.noreply.github.com> Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com> Co-authored-by: Rhett Ying <85214957+Rhett-Ying@users.noreply.github.com> Co-authored-by: Hongzhi (Steve), Chen <chenhongzhi.nkcs@gmail.com> Co-authored-by: Ubuntu <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal> Co-authored-by: Ubuntu <ubuntu@ip-172-31-9-26.ap-northeast-1.compute.internal> Co-authored-by: Zhiteng Li <55398076+ZHITENGLI@users.noreply.github.com> Co-authored-by: rudongyu <ru_dongyu@outlook.com> Co-authored-by: Quan Gan <coin2028@hotmail.com> Co-authored-by: Vibhu Jawa <vibhujawa@gmail.com> Co-authored-by: Ubuntu <ubuntu@ip-172-31-16-19.ap-northeast-1.compute.internal> Co-authored-by: czkkkkkk <zekucai@gmail.com> Co-authored-by: kylasa <kylasa@gmail.com> Co-authored-by: Muhammed Fatih BALIN <m.f.balin@gmail.com> Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>

Auto fix update-version

db05bf4

frozenbugs changed the title ~~[Code Style] Auto fix update-version.py~~ [Readability] Auto fix update-version.py Aug 22, 2022

Auto fix setup.py

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frozenbugs changed the title ~~[Readability] Auto fix update-version.py~~ [Readability] Auto fix setup.py and update-version.py Aug 22, 2022

Merge branch 'master' into fix-update-version-py

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frozenbugs requested a review from BarclayII August 24, 2022 06:06

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Merge branch 'master' into fix-update-version-py

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Ubuntu and others added 16 commits September 8, 2022 14:52

Auto fix update-version

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Auto fix setup.py

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[Doc] Change random.py to random_partition.py in guide on distributed…

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… partition pipeline (#4438) * Update distributed-preprocessing.rst * Update Co-authored-by: Ubuntu <ubuntu@ip-172-31-9-26.ap-northeast-1.compute.internal>

fix unpinning when tensoradaptor is not available (#4450)

43a918d

[Doc] fix print issue in tutorial (#4459)

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[Example][Refactor] Refactor RGCN example (#4327)

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* Refactor full graph entity classification * Refactor rgcn with sampling * README update * Update * Results update * Respect default setting of self_loop=false in entity.py * Update * Update README * Update for multi-gpu * Update

[doc] fix invalid link in user guide (#4468)

b17c23b

[Example] directional_GSN for ogbg-molpcba (#4405)

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* version-1 * version-2 * version-3 * update examples/README * Update .gitignore * update performance in README, delete scripts * 1st approving review * 2nd approving review Co-authored-by: Mufei Li <mufeili1996@gmail.com>

Clarify the message name, which is 'm'. (#4462)

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Co-authored-by: Ubuntu <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal> Co-authored-by: Rhett Ying <85214957+Rhett-Ying@users.noreply.github.com>

[Refactor] Auto fix view.py. (#4461)

39f6195

Co-authored-by: Ubuntu <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal> Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>

[CI] use https instead of http (#4488)

8358826

[BugFix] fix crash due to incorrect dtype in dgl.to_block() (#4487)

e7bb888

* [BugFix] fix crash due to incorrect dtype in dgl.to_block() * fix test failure in TF

[Feature] Make TensorAdapter Stream Aware (#4472)

ea42d68

* Allocate tensors in DGL's current stream * make tensoradaptor stream-aware * replace TAemtpy with cpu allocator * fix typo * try fix cpu allocation * clean header * redirect AllocDataSpace as well * resolve comments

[Build][Doc] Specify the sphinx version (#4465)

8edf9dc

Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>

Merge branch 'fix-update-version-py' of https://github.com/frozenbugs…

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…/dgl into fix-update-version-py

frozenbugs requested review from BarclayII and jermainewang September 9, 2022 06:46

Steve and others added 2 commits September 9, 2022 07:23

reformat

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Merge branch 'master' into fix-update-version-py

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BarclayII approved these changes Sep 9, 2022

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Steve added 2 commits September 9, 2022 07:40

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Merge branch 'fix-update-version-py' of https://github.com/frozenbugs…

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…/dgl into fix-update-version-py

frozenbugs removed the request for review from jermainewang September 9, 2022 07:55

Ubuntu added 5 commits September 13, 2022 03:02

Auto fix update-version

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Auto fix setup.py

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reformat

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reformat

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Merge branch 'fix-update-version-py' of https://github.com/frozenbugs…

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…/dgl into fix-update-version-py

frozenbugs merged commit 701c6fe into dmlc:master Sep 14, 2022

frozenbugs deleted the fix-update-version-py branch September 16, 2022 10:04

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