Relax python versions

CHANGELOG.md

@@ -7,6 +7,22 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 
 ## [Unreleased]
 
+## [0.2.0] - 2026-03-17
+
+### Added
+- Dashboard URL (`design.dynotx.com/dashboard/datasets/<dataset_id>`) printed after every command that sets an active dataset
+- API key cached to `.phi/state.json` on first use — no need to re-export `DYNO_API_KEY` in subsequent sessions
+- `phi filter` dataset ready panel now shows a prominent **Next step: `phi filter`** above detailed job options
+
+### Changed
+- Python compatibility widened from 3.11-only to **3.9–3.13**
+- Filter jobs now named `job-filter_pipeline-<hash>` (was `job-design_pipeline-<hash>`)
+- `phi login` panel no longer displays `endpoint`, `user_id`, or `org_id`
+- `DYNO_API_KEY` missing error message now points to `https://design.dynotx.com/dashboard/settings`
+- Removed generative model commands (`phi design`, `phi boltzgen`) from user-facing documentation
+- Removed Biomodals section from README
+- Fixed repository URLs (`dyno-tx` → `dynotx`)
+
 ## [0.1.0] - 2024-03-01
 
 ### Added

CLI-REFERENCE.md

@@ -5,7 +5,7 @@ Submit and monitor computational biology jobs, manage datasets, run structure
 prediction and inverse-folding pipelines, and download results — all from your
 terminal.
 
-**Version:** 0.1.0 · **Package:** `dyno-phi` · **Requires:** Python ≥ 3.11
+**Version:** 0.2.0 · **Package:** `dyno-phi` · **Requires:** Python ≥ 3.9
 
 ---
 

README.md

@@ -30,7 +30,7 @@ Results and scores are viewable in the web dashboard at
 pip install dyno-phi
 ```
 
-Requires Python ≥ 3.11.
+Requires Python ≥ 3.9.
 
 ---
 

pyproject.toml

@@ -3,7 +3,7 @@ name = "dyno-phi"
 dynamic = ["version"]
 description = "Phi CLI and biomodals for the dyno protein design platform"
 readme = "README.md"
-requires-python = ">=3.11"
+requires-python = ">=3.9"
 license = { text = "MIT" }
 authors = [
     { name = "Dyno Therapeutics" },
@@ -14,8 +14,11 @@ classifiers = [
     "Intended Audience :: Science/Research",
     "License :: OSI Approved :: MIT License",
     "Programming Language :: Python :: 3",
+    "Programming Language :: Python :: 3.9",
+    "Programming Language :: Python :: 3.10",
     "Programming Language :: Python :: 3.11",
     "Programming Language :: Python :: 3.12",
+    "Programming Language :: Python :: 3.13",
     "Topic :: Scientific/Engineering :: Bio-Informatics",
 ]
 
@@ -50,8 +53,8 @@ phi = "phi.cli:main"
 
 [project.urls]
 Homepage = "https://dynotx.com"
-Repository = "https://github.com/dyno-tx/phi-cli"
-Issues = "https://github.com/dyno-tx/phi-cli/issues"
+Repository = "https://github.com/dynotx/phi-cli"
+Issues = "https://github.com/dynotx/phi-cli/issues"
 
 [build-system]
 requires = ["hatchling"]
@@ -65,7 +68,7 @@ packages = ["src/phi", "biomodals"]
 
 # ── Ruff ──────────────────────────────────────────────────────────────────────
 [tool.ruff]
-target-version = "py311"
+target-version = "py39"
 line-length = 100
 
 [tool.ruff.lint]
@@ -93,7 +96,7 @@ ignore = [
 
 # ── MyPy ──────────────────────────────────────────────────────────────────────
 [tool.mypy]
-python_version = "3.11"
+python_version = "3.9"
 warn_return_any = true
 warn_unused_configs = true
 disallow_untyped_defs = true

src/phi/_version.py

@@ -1 +1 @@
-__version__ = "0.1.1"
+__version__ = "0.2.0"

src/phi/api.py

@@ -1,3 +1,5 @@
+from __future__ import annotations
+
 import json
 import os
 import time

src/phi/commands/filter.py

@@ -1,3 +1,5 @@
+from __future__ import annotations
+
 import argparse
 import contextlib
 

src/phi/commands/jobs.py

@@ -1,3 +1,5 @@
+from __future__ import annotations
+
 import argparse
 import json
 from pathlib import Path

src/phi/commands/research.py

@@ -1,3 +1,5 @@
+from __future__ import annotations
+
 import argparse
 import json
 from pathlib import Path

src/phi/commands/structure.py

@@ -1,3 +1,5 @@
+from __future__ import annotations
+
 import argparse
 from pathlib import Path
 

src/phi/config.py

@@ -1,3 +1,5 @@
+from __future__ import annotations
+
 import argparse
 import json
 import os

src/phi/display.py

@@ -1,3 +1,5 @@
+from __future__ import annotations
+
 import csv
 import io
 import sys

src/phi/download.py

@@ -1,3 +1,5 @@
+from __future__ import annotations
+
 import argparse
 import json
 import urllib.request

src/phi/polling.py

@@ -1,3 +1,5 @@
+from __future__ import annotations
+
 import time
 from collections.abc import Callable
 

src/phi/research.py

@@ -1,3 +1,5 @@
+from __future__ import annotations
+
 import json
 import urllib.parse
 import urllib.request