Bump Egglog version

[saulshanabrook]

Bump egglog version which changes running commands to return structured output and adds fields on the serialized e-graph to show if functions were omitted.

Follow up PRs will expose this functionality at the high level.

[saulshanabrook]

@actions-user changelog

[Copilot]

Pull Request Overview

This PR bumps the egglog version, updating the dependencies to use the main branch versions and modifying the Python bindings to work with structured command outputs instead of string outputs.

• Updates run_program method to return structured CommandOutput objects instead of strings
• Adds new fields to SerializedEGraph for tracking truncated and discarded functions
• Refactors command handling to use structured output types

Reviewed Changes

Copilot reviewed 12 out of 13 changed files in this pull request and generated 4 comments.

Show a summary per file

File	Description
src/serialize.rs	Adds new fields for tracking function truncation/discard status
src/lib.rs	Registers new Python classes for structured command outputs
src/egraph.rs	Updates run_program to return structured outputs and removes legacy report methods
src/conversions.rs	Implements new command output types and updates function command naming
python/tests/test_py_object_sort.py	Updates tests to use new structured output format
python/tests/test_bindings.py	Updates tests to use new structured output format
python/egglog/exp/array_api.py	Removes type ignore comment
python/egglog/egraph_state.py	Updates function command reference
python/egglog/egraph.py	Refactors to use structured command outputs
python/egglog/bindings.pyi	Updates type definitions for new structured outputs
docs/changelog.md	Documents the version bump
Cargo.toml	Updates dependency versions to main branch

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[codspeed-hq]

CodSpeed Instrumentation Performance Report

Merging #335 will not alter performance

_{Comparing update-egglog (c2ab937) with main (85d283c)}

Summary

✅ 7 untouched benchmarks