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1. octoFLU octoFLU Public

   Script that labels phylogenetic clades based on the clade of the nearest neighbor using patristic distances determined from the tree.

   Python 12 10

2. smot smot Public

   Simple Manipulation Of Trees

   Python 13 6

3. parnas parnas Public

   Phylogenetic maximum representation sampling: choosing most representative strains or taxa

   Python 40 3

4. TreeSort TreeSort Public

   Virus reassortment inference software. Infers both recent and ancestral reassortment and uses flexible molecular clock constraints.

   Python 20

5. classLog classLog Public

   Zeller et al. Logistic regression classifier for genetic sequences

   Python 3 1

6. rf-net-2 rf-net-2 Public

   Phylogenetic network inference for reassortment detection using rf-net-2

   7 1