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@fmfi-compbio

Computational Biology Research Group at Comenius University in Bratislava

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  1. deepnano-blitz deepnano-blitz Public

    Very fast ONT basecaller

    Rust 52 11

  2. admm-pruning admm-pruning Public

    Python 30 1

  3. osprey osprey Public

    Fast bird catching fishes AKA realtime very high accuracy CPU basecaller for Oxford nanopore reads.

    C++ 15 1

  4. warpstr warpstr Public

    Determining tandem repeat lengths using raw nanopore signals.

    Python 15 1

  5. coral-basecaller coral-basecaller Public

    Python 12 1

  6. heron heron Public

    HAC nanopore basecaller

    Python 6 2

Repositories

Showing 10 of 42 repositories
  • mad Public

    Webpage of Data Management course

    fmfi-compbio/mad’s past year of commit activity
    HTML 0 0 0 0 Updated Dec 29, 2025
  • mbi Public
    fmfi-compbio/mbi’s past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Dec 26, 2025
  • pridav_tutorials Public
    fmfi-compbio/pridav_tutorials’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Nov 4, 2025
  • jamang-code Public

    Code used for Jaminaea angkorensis analysis

    fmfi-compbio/jamang-code’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Sep 12, 2025
  • kdiff Public
    fmfi-compbio/kdiff’s past year of commit activity
    C++ 1 0 0 0 Updated Sep 4, 2025
  • assembly-scripts Public

    A selection of scripts useful for genome assembly.

    fmfi-compbio/assembly-scripts’s past year of commit activity
    Perl 0 MIT 0 0 0 Updated Sep 3, 2025
  • admm-pruning Public
    fmfi-compbio/admm-pruning’s past year of commit activity
    Python 30 MIT 1 2 0 Updated Jul 22, 2024
  • mcdp2 Public

    Tool for colocalization analysis for genomic annotations with genomic contexts

    fmfi-compbio/mcdp2’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Jun 17, 2024
  • canParSR23 Public

    Assembly of yeast Candida parapsilosis strain SR23

    fmfi-compbio/canParSR23’s past year of commit activity
    Gnuplot 0 0 0 0 Updated May 18, 2024
  • neural-network-merging Public
    fmfi-compbio/neural-network-merging’s past year of commit activity
    Jupyter Notebook 6 3 0 1 Updated Sep 20, 2023
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