The GC2C application visualizes individual species rendered as a small spheres and placed in 3D space. The position of the 3D sphere is based on a vector composed of DNA, cDNA and, cds values. These values are normalized and converted to the interval from 0 to 1 in a unit cube with red-green-blue color axes.
The GC2C application is implemented in the Java programming language and the OpenGL graphics library (lwjgl).
- JDK/JRE version 15
- lwjgl 3.3 (https://www.lwjgl.org/guide)
Interaction in 3D space
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Left Mouse Button - camera view direction setting
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W/S - forward and backward camera moving
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A/D - left and right camera moving
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Ctrl/Shift - down and up camera moving
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Space - 1st or 3rd person camera mode setting
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R/F - near or far from center in 3rd person camera mode, only for perspective projection
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X - camera reset
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P - perspective or orthogonal projection
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H - show help
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BackSpace - color mode
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Right Mouse Button - select species, information shown in bottom row, selected species is flashing
Visualization modes
- in 3D cube
- in planar tree chard
- arrows <- -> - line interpolation between the positions in both modes
- arrows up/down - size of spheres
Data analyze mode - making eser defined groups, groups colored and connected by lines with center of the group
- T - change modes
- nothing - no groups
- threshold - according to the distance from the root of the tree
- categories - according to the level of the depth of the tree
- PageDown/Up - set the distance or level
- Insert/Delete - change color of the selected groups
Precompiled version for win64 Java 15 https://lide.uhk.cz/fim/ucitel/jezekbr1/genome/genomeVis_jar.zip.
unzip
run java -jar genomeVis.jar
3D visualization of all species
Visualisation of selected species
Detail view with information of selected fish
