Bump Bio-Formats, bioformats2raw and raw2ometiff versions #76
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See * https://github.com/glencoesoftware/bioformats2raw/releases/tag/v0.11.0 * https://github.com/glencoesoftware/bioformats2raw/releases/tag/v0.10.1 * https://github.com/glencoesoftware/bioformats2raw/releases/tag/v0.10.0 * https://github.com/glencoesoftware/bioformats2raw/releases/tag/v0.9.4 * https://github.com/glencoesoftware/raw2ometiff/releases/tag/v0.8.0 and * https://bio-formats.readthedocs.io/en/v8.3.0/about/whats-new.html * https://bio-formats.readthedocs.io/en/v8.2.0/about/whats-new.html * https://bio-formats.readthedocs.io/en/v8.1.1/about/whats-new.html * https://bio-formats.readthedocs.io/en/v8.1.0/about/whats-new.html * https://bio-formats.readthedocs.io/en/v8.0.1/about/whats-new.html * https://bio-formats.readthedocs.io/en/v8.0.0/about/whats-new.html for the list of upstream changes
…lang3 Declare org.apache.commons:commons-lang3 as a direct dependency
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melissalinkert
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Makes sense, as discussed separately. bioformats2raw does have a few new options (--compact and --no-tiles in particular), so before merging I think we should decide on the roadmap for adding those options vs just getting #75 merged and released quickly.
Leaving open for discussion in Wednesday meetings, and then happy to approve/merge once we have a plan.
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Thanks Melissa. I mostly opened #76 to start the discussion internally but from my side, the priority should be to target a release of NGFF-Converter with #75 included as soon as possible. In preparation of this discussion, would it be useful to look into the updates to this PR necessary to expose the new API options introduced in bioformats2raw in the graphical interface? |
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As discussed on Friday, the last commit now exposes the new conversion options introduced in Testing-wise, it should be possible to select:
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Diff makes sense, and testing with the new Compact dimensions and Disable tile writing options works as expected.
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As per the changes in ome/bioformats#4343,
commons-langis no longer a transitive dependency of Bio-Formats. 9f1f9a6 updates the code base tocommons-lang3and declares it as an explicit dependency.