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Looking at the code in autotools_package.py, I see explicit hardcoding with a hook function for rpath support on Linux.
In general, I would be more comfortable if our default behavior was to trust the build system (in this case, modern autotools should do a pretty good job of building the right thing on both Linux and OS X), instead of trying to be smarter than it. I'm really not interested in reinventing all the work that goes into autotools, CMake, etc...
Thoughts from others?
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