validate_bids: add -l|--log-level control and do log some information #1116
Description
Inspired by
ATM there seems to be no control over how "verbose" tool should be:
❯ validate_bids --help
usage: validate_bids [-h] [-ec ERROR_LIMIT] [-ef ERRORS_BY_FILE] [-f {text,json,json_pp}] [-o OUTPUT_FILE] [-p] [-s [SUFFIXES ...]] [-v] [-w] [-x [EXCLUDE_DIRS ...]] data_path
Validate a BIDS-formatted HED dataset.
positional arguments:
data_path Full path of dataset root directory.
options:
-h, --help show this help message and exit
-ec ERROR_LIMIT, --error_count ERROR_LIMIT
Limit the number of errors of each code type to report for text output.
-ef ERRORS_BY_FILE, --errors_by_file ERRORS_BY_FILE
Apply error limit by file rather than overall for text output.
-f {text,json,json_pp}, --format {text,json,json_pp}
Output format: 'text' (default) or 'json' ('json_pp' for pretty-printed json)
-o OUTPUT_FILE, --output_file OUTPUT_FILE
Full path of output of validator -- otherwise output written to standard error.
-p, --print_output If present, output the results to standard out in addition to any saving of the files.
-s [SUFFIXES ...], --suffixes [SUFFIXES ...]
Optional list of suffixes (no under_bar) of tsv files to validate. If -s with no values, will use all possible suffixes as with single argument '*'.
-v, --verbose If present, output informative messages as computation progresses.
-w, --check_for_warnings
If present, check for warnings as well as errors.
-x [EXCLUDE_DIRS ...], --exclude-dirs [EXCLUDE_DIRS ...]
Directories name to exclude in search for files to validate.
I would expect to have smth like (copying from dandi --help)
-l, --log-level [DEBUG|INFO|WARNING|ERROR|CRITICAL]
Log level (case insensitive). May be
specified as an integer. [default: INFO]
and with -l DEBUG showing progress on what client considers to validate etc, so if crashes -- we know what it was doing