Errors in "ngs_fa_stat" and "ngs_trans_reads" when process SRS data

[tankzone29]

Hi all,

Thanks for making this great tool for SV calling.

I tried to run on some SRS data using the statically binary gcSV_release_v1.0.0 and compiled executable, but they gave me the same following errors in the first two steps

> gcSV ngs_fa_stat ref.fa > ref.stat.txt
> gcSV ngs_trans_reads ref.fa Ill_input.bam TL.bam 

When doing the preprocess of SRS reads,

For the step 1: precomputing local repeat complexity information using ngs_fa_stat for a reference genome

It stopped with error in chr12, and the error message is

terminate called after throwing an instance of 'std::out_of_range'
  what():  basic_string::substr: __pos (which is 10) > this->size() (which is 9)

If we skip the step 1 but do step 2: Preprocess alignment data using ngs_trans_reads to reduce I/O demands and accelerate analysis. It reports error

*** buffer overflow detected ***: terminated
Aborted

Could you let me know how resolve these issues? Also, I'd like to know if gcSV can be used for single-ended SRS data?

Thanks.