V2.2.00

.github/workflows/idefix-ci-doc.yml

@@ -0,0 +1,24 @@
+name: Build the docs
+on:
+  workflow_dispatch:
+  push:
+    branches:
+      - master
+      - develop
+  pull_request:
+    paths-ignore:
+      - '.github/ISSUE_TEMPLATE/*'
+
+
+jobs:
+  ReadTheDocs:
+    runs-on: ubuntu-latest
+    steps:
+      - name: Check out repo
+        uses: actions/checkout@v3
+      - name: install doxygen
+        run: sudo apt-get install -y doxygen
+      - name: install python dependencies
+        run: python -m pip install --exists-action=w --no-cache-dir -r doc/python_requirements.txt
+      - name: compile documentation
+        run: python -m sphinx -T -b html -d _build/doctrees -D language=en doc/source doc/html

.github/workflows/idefix-ci-jobs.yml

@@ -0,0 +1,203 @@
+on:
+  workflow_call:
+    inputs:
+      TESTME_OPTIONS:
+        required: true
+        type: string
+      IDEFIX_COMPILER:
+        required: true
+        type: string
+
+# concurrency:
+#   # auto-cancel any concurrent job *in the same context*
+#   # see https://docs.github.com/en/actions/using-workflows/workflow-syntax-for-github-actions#concurrency
+#   # see https://docs.github.com/en/actions/learn-github-actions/contexts#github-context
+#   group: ${{ github.workflow }}-${{ github.ref }}
+#   cancel-in-progress: true
+
+env:
+  IDEFIX_COMPILER: ${{ inputs.IDEFIX_COMPILER }}
+  TESTME_OPTIONS: ${{ inputs.TESTME_OPTIONS }}
+  PYTHONPATH: ${{ github.workspace }}
+  IDEFIX_DIR: ${{ github.workspace }}
+
+jobs:
+  ShocksHydro:
+    runs-on: self-hosted
+    steps:
+      - name: Check out repo
+        uses: actions/checkout@v3
+        with:
+          submodules: recursive
+      - name: Sod test
+        run: scripts/ci/run-tests $IDEFIX_DIR/test/HD/sod -all $TESTME_OPTIONS
+      - name: Isothermal Sod test
+        run: scripts/ci/run-tests $IDEFIX_DIR/test/HD/sod-iso -all $TESTME_OPTIONS
+      - name: Mach reflection test
+        run: scripts/ci/run-tests $IDEFIX_DIR/test/HD//MachReflection -all $TESTME_OPTIONS
+
+  ParabolicHydro:
+    runs-on: self-hosted
+    steps:
+      - name: Check out repo
+        uses: actions/checkout@v3
+        with:
+          submodules: recursive
+      - name: Viscous flow past cylinder
+        run: scripts/ci/run-tests $IDEFIX_DIR/test/HD/ViscousFlowPastCylinder -all $TESTME_OPTIONS
+      - name: Viscous disk
+        run: scripts/ci/run-tests $IDEFIX_DIR/test/HD/ViscousDisk -all $TESTME_OPTIONS
+      - name: Thermal diffusion
+        run: scripts/ci/run-tests $IDEFIX_DIR/test/HD/thermalDiffusion -all $TESTME_OPTIONS
+
+  ShocksMHD:
+    runs-on: self-hosted
+    steps:
+      - name: Check out repo
+        uses: actions/checkout@v3
+        with:
+          submodules: recursive
+      - name: MHD Sod test
+        run: scripts/ci/run-tests $IDEFIX_DIR/test/MHD/sod -all $TESTME_OPTIONS
+      - name: MHD Isothermal Sod test
+        run: scripts/ci/run-tests $IDEFIX_DIR/test/MHD/sod-iso -all $TESTME_OPTIONS
+      - name: Orszag Tang
+        run: scripts/ci/run-tests $IDEFIX_DIR/test/MHD/OrszagTang -all $TESTME_OPTIONS
+      - name: Orszag Tang 3D+restart tests
+        run: scripts/ci/run-tests $IDEFIX_DIR/test/MHD/OrszagTang3D -all $TESTME_OPTIONS
+
+  ParabolicMHD:
+    runs-on: self-hosted
+    steps:
+      - name: Check out repo
+        uses: actions/checkout@v3
+        with:
+          submodules: recursive
+      - name: Ambipolar C Shock
+        run: scripts/ci/run-tests $IDEFIX_DIR/test/MHD/AmbipolarCshock -all $TESTME_OPTIONS
+      - name: Ambipolar C Shock 3D
+        run: scripts/ci/run-tests $IDEFIX_DIR/test/MHD/AmbipolarCshock3D -all $TESTME_OPTIONS
+      - name: Resistive Alfvén wave
+        run: scripts/ci/run-tests $IDEFIX_DIR/test/MHD/ResistiveAlfvenWave -all $TESTME_OPTIONS
+      - name: Grid coarsening diffusion
+        run: scripts/ci/run-tests $IDEFIX_DIR/test/MHD/Coarsening -all $TESTME_OPTIONS
+      - name: Hall whistler waves
+        run: scripts/ci/run-tests $IDEFIX_DIR/test/MHD/HallWhistler -all $TESTME_OPTIONS
+
+  Fargo:
+    needs: [ShocksHydro, ParabolicHydro, ShocksMHD, ParabolicMHD]
+    runs-on: self-hosted
+    steps:
+      - name: Check out repo
+        uses: actions/checkout@v3
+        with:
+          submodules: recursive
+      - name: Fargo + planet
+        run: scripts/ci/run-tests $IDEFIX_DIR/test/HD/FargoPlanet -all $TESTME_OPTIONS
+      - name: Fargo MHD spherical
+        run: scripts/ci/run-tests $IDEFIX_DIR/test/MHD/FargoMHDSpherical -all $TESTME_OPTIONS
+
+  ShearingBox:
+    needs: [ShocksHydro, ParabolicHydro, ShocksMHD, ParabolicMHD]
+    runs-on: self-hosted
+    steps:
+      - name: Check out repo
+        uses: actions/checkout@v3
+        with:
+          submodules: recursive
+      - name: Hydro shearing box
+        run: scripts/ci/run-tests $IDEFIX_DIR/test/HD/ShearingBox -all $TESTME_OPTIONS
+      - name: MHD shearing box
+        run: scripts/ci/run-tests $IDEFIX_DIR/test/MHD/ShearingBox -all $TESTME_OPTIONS
+
+  SelfGravity:
+    needs: [ShocksHydro, ParabolicHydro, ShocksMHD, ParabolicMHD]
+    runs-on: self-hosted
+    steps:
+      - name: Check out repo
+        uses: actions/checkout@v3
+        with:
+          submodules: recursive
+      - name: Jeans Instability
+        run: scripts/ci/run-tests $IDEFIX_DIR/test/SelfGravity/JeansInstability -all $TESTME_OPTIONS
+      - name: Random sphere spherical
+        run: scripts/ci/run-tests $IDEFIX_DIR/test/SelfGravity/RandomSphere -all $TESTME_OPTIONS
+      - name: Random sphere cartesian
+        run: scripts/ci/run-tests $IDEFIX_DIR/test/SelfGravity/RandomSphereCartesian -all $TESTME_OPTIONS
+      - name: Uniform spherical collapse
+        run: scripts/ci/run-tests $IDEFIX_DIR/test/SelfGravity/UniformCollapse -all $TESTME_OPTIONS
+      - name: Dusty spherical collapse
+        run: scripts/ci/run-tests $IDEFIX_DIR/test/SelfGravity/DustyCollapse -all $TESTME_OPTIONS
+
+  Planet:
+    needs: [ShocksHydro, ParabolicHydro, ShocksMHD, ParabolicMHD]
+    runs-on: self-hosted
+    steps:
+      - name: Check out repo
+        uses: actions/checkout@v3
+        with:
+          submodules: recursive
+      - name: 3 body
+        run: scripts/ci/run-tests $IDEFIX_DIR/test/Planet/Planet3Body -all $TESTME_OPTIONS
+      - name: migration
+        run: scripts/ci/run-tests $IDEFIX_DIR/test/Planet/PlanetMigration2D -all $TESTME_OPTIONS
+      - name: planet-planet
+        run: scripts/ci/run-tests $IDEFIX_DIR/test/Planet/PlanetPlanetRK42D -all $TESTME_OPTIONS
+      - name: spiral wake
+        run: scripts/ci/run-tests $IDEFIX_DIR/test/Planet/PlanetSpiral2D -all $TESTME_OPTIONS
+      - name: torques
+        run: scripts/ci/run-tests $IDEFIX_DIR/test/Planet/PlanetTorque3D -all $TESTME_OPTIONS
+      - name: RK5
+        run: scripts/ci/run-tests $IDEFIX_DIR/test/Planet/PlanetsIsActiveRK52D -all $TESTME_OPTIONS
+
+  Dust:
+    needs: [ShocksHydro, ParabolicHydro, ShocksMHD, ParabolicMHD]
+    runs-on: self-hosted
+    steps:
+      - name: Check out repo
+        uses: actions/checkout@v3
+        with:
+          submodules: recursive
+      - name: Energy conservation
+        run: scripts/ci/run-tests $IDEFIX_DIR/test/Dust/DustEnergy -all $TESTME_OPTIONS
+      - name: Dusty wave
+        run: scripts/ci/run-tests $IDEFIX_DIR/test/Dust/DustyWave -all $TESTME_OPTIONS
+
+  Braginskii:
+    needs: [ShocksHydro, ParabolicHydro, ShocksMHD, ParabolicMHD]
+    runs-on: self-hosted
+    steps:
+      - name: Check out repo
+        uses: actions/checkout@v3
+        with:
+          submodules: recursive
+      - name: MTI
+        run: scripts/ci/run-tests $IDEFIX_DIR/test/MHD/MTI -all $TESTME_OPTIONS
+      - name: Spherical anisotropic diffusion
+        run: scripts/ci/run-tests $IDEFIX_DIR/test/MHD/sphBragTDiffusion -all $TESTME_OPTIONS
+      - name: Spherical anisotropic viscosity
+        run: scripts/ci/run-tests $IDEFIX_DIR/test/MHD/sphBragViscosity -all $TESTME_OPTIONS
+
+  Examples:
+    needs: [Fargo, Dust, Planet, ShearingBox, SelfGravity]
+    runs-on: self-hosted
+    steps:
+      - name: Check out repo
+        uses: actions/checkout@v3
+        with:
+          submodules: recursive
+      - name: Run examples test
+        run: cd test && ./checks_examples.sh $TEST_OPTIONS
+
+  Utils:
+    needs: [Fargo, Dust, Planet, ShearingBox, SelfGravity]
+    runs-on: self-hosted
+    steps:
+      - name: Check out repo
+        uses: actions/checkout@v3
+        with:
+          submodules: recursive
+      - name: Lookup table
+        run: scripts/ci/run-tests $IDEFIX_DIR/test/utils/lookupTable -all $TESTME_OPTIONS
+      - name: Dump Image
+        run: scripts/ci/run-tests $IDEFIX_DIR/test/utils/dumpImage -all $TESTME_OPTIONS