Automatic Graph Visualizer

Environment(Docker) setup

Build the docker

$ sudo docker build -t autogv -f .

Activate from the docker image

$ bash run_docker.sh

You can use Jupyter-lab

$ bash jupyter-lab.sh

Name		Name	Last commit message	Last commit date
Latest commit History 39 Commits
.ipynb_checkpoints		.ipynb_checkpoints
cytoscape install		cytoscape install
.DS_Store		.DS_Store
.gitignore		.gitignore
Dockerfile		Dockerfile
README.md		README.md
R_install.r		R_install.r
Untitled.ipynb		Untitled.ipynb
WP1971 - Integrated Cancer Pathway - Homo sapiens.json		WP1971 - Integrated Cancer Pathway - Homo sapiens.json
jupyter-lab.sh		jupyter-lab.sh
py3sample_nx.cx		py3sample_nx.cx
run_docker.sh		run_docker.sh
test1.ipynb		test1.ipynb
test2.ipynb		test2.ipynb
tmp.ipynb		tmp.ipynb
tmp.json		tmp.json
visualize_depend_on_vcount.ipynb		visualize_depend_on_vcount.ipynb
workflow_Rtopy_ndex.ipynb		workflow_Rtopy_ndex.ipynb
yeastHighQuality.sif		yeastHighQuality.sif