Error on runJJM("model2014", path="config", input="input", exec="jjm2014")

[jimianelli]

Modified the command slightly (jjm2014 instead of jjm2014.exe) and Hessian and estimation all worked and results existed:
Models were run at /var/folders/qb/mr3sb1m1403cqwg1yy0qtjz80000gn/T//Rtmpc8aNrx folder.

But the copying of files failed...
Warning messages:
1: In .checkGuess(models, guess, output) :
Using the same initial guess for all models.
2: In file.create(to[okay]) :
cannot create file 'results/model2014.par', reason 'No such file or directory'
3: In file.create(to[okay]) :
cannot create file 'results/model2014.rep', reason 'No such file or directory'
4: In file.create(to[okay]) :
cannot create file 'results/model2014.std', reason 'No such file or directory'
5: In file.create(to[okay]) :
cannot create file 'results/model2014.cor', reason 'No such file or directory'
6: In file.create(to[okay]) :
cannot create file 'results/model2014.yld', reason 'No such file or directory'
7: In file.create(to[okay]) :
cannot create file 'results/model2014_1_R.rep', reason 'No such file or directory'

[jimianelli]

Note that by copying these files by hand, I was successful in getting

mod2014 = readJJM("model2014", path="config", input="input", version="2014")
summary(mod2014)$like
a = plot(mod2014, what = "biomass", main = "Total Biomass")
b = plot(mod2014, what = "noFishTB", main = "Unfished Biomass")
c = plot(mod2014, what = "ssb", main = "Spawning Biomass")
d = plot(mod2014, what = "ftot", main = "Fishing mortality")

to work...

[roliveros-ramos]

We tested on linux, and the problem is solve now in the last commit of jjmTools. Would you mind to check if it works for you?

[jimianelli]

I'll try it this evening, however we shouldn't be posting big binary files like this on github...it takes a long time to clone/update and can cause problems down the road. think simple solution is to drop the ".exe" from the scripts and use robust directory slashes and naming conventions in R...

[roliveros-ramos]

Done, please pull the last commit of jjmTools, now exec="jjm2014" will match "jjm2014.exe" in windows and "jjm2014" in other OS.