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  • University of Illinois Urbana-Champaign (UIUC)

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  1. SysBioChalmers/DLKcat SysBioChalmers/DLKcat Public

    Deep learning and Bayesian approach applied to enzyme turnover number for the improvement of enzyme-constrained genome-scale metabolic models (ecGEMs) reconstruction

    Python 183 64

  2. SysBioChalmers/HGTphyloDetect SysBioChalmers/HGTphyloDetect Public

    HGTphyloDetect is a versatile toolbox to identify horizontal gene transfer (HGT) events combined with phylogenetic analysis.

    Python 44 6

  3. SysBioChalmers/MLEssential SysBioChalmers/MLEssential Public

    A computational toolbox to predict essential genes using machine learning based on sequence and evolution-based information

    Python 3

  4. SysBioChalmers/Yeast-Species-GEMs SysBioChalmers/Yeast-Species-GEMs Public

    A universal metabolic model knowledge database (pan-GEM) for current existing yeast species with genome sequence, based on which we will build the GEMs of high quality for each yeast species.

    Pep8 8 5

  5. SysBioChalmers/Multi_scale_evolution SysBioChalmers/Multi_scale_evolution Public

    Multi-scale evolution analysis of with aid of protein 3D structures for 332 different yeast species plus 11 fungal species.

    HTML 5 1

  6. OED OED Public

    Open Enzyme Database: A Community-wide Repository for Sharing Enzyme Data

    Python 1 1