FreqUsedTools

Frequently used tools

human gene annotation

gene.anno.GRCh38.v3.Jun2025.Rdata [TF, ligand, etc]

print(load(url("https://github.com/leezx/FreqUsedTools/raw/refs/heads/main/Rdata/gene.anno.GRCh38.v3.Jun2025.Rdata")))

JASPAR motif annotation

print(load(url("https://github.com/leezx/bt2m/raw/main/data/JASPAR.motif.rmDup.rda")))

TCGA CRC DEGs

gepia2_COAD_DEGs.Rdata [from: http://localhost:17449/lab/tree/projects/public_resources/public_DB/DepMap-CRC-org-viability-screen.ipynb]

batch t.test

http://localhost:17449/lab/tree/projects/LiLab/selfDB/Drug-DB/CTRP_v2/CTRPv2.ipynb#batch-t.test