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@lehtiolab

Lehtiö lab

Research group of Janne Lehtiö at Scilifelab/Karolinska Institutet

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  1. proteogenomics-analysis-workflow proteogenomics-analysis-workflow Public

    IPAW: a Nextflow workflow for proteogenomics

    Python 29 10

  2. ddamsproteomics ddamsproteomics Public

    A Nextflow MS DDA proteomics pipeline

    Nextflow 7 6

  3. verkstad_client verkstad_client Public

    The alternative ToDo app, optimized for proteomics mass spectrometer maintenance.

    Vue 6

  4. msstitch msstitch Public

    MS proteomics post-processing utilities

    Python 5 3

  5. nf-helaqc_refine nf-helaqc_refine Public

    Lehtiö lab analysis workflows

    Nextflow 5 4

  6. Code-Availability Code-Availability Public

    Code availability for Lehtiö lab papers

    R 3 8

Repositories

Showing 10 of 20 repositories
  • kantele Public

    Lab proteomics raw and search data management

    lehtiolab/kantele’s past year of commit activity
    Python 2 1 32 1 Updated Jan 30, 2026
  • nf-helaqc_refine Public

    Lehtiö lab analysis workflows

    lehtiolab/nf-helaqc_refine’s past year of commit activity
    Nextflow 5 MIT 4 0 0 Updated Jan 29, 2026
  • static-resources Public

    Resources that are unlikely to change often, such as configs, test, or infrastructure data

    lehtiolab/static-resources’s past year of commit activity
    0 MIT 0 0 0 Updated Jan 28, 2026
  • lehtiodocs Public
    lehtiolab/lehtiodocs’s past year of commit activity
    0 0 2 0 Updated Jan 20, 2026
  • lehtiolab.github.io Public

    Code & development space for producing new lehtiolab website

    lehtiolab/lehtiolab.github.io’s past year of commit activity
    JavaScript 0 0 4 0 Updated Jan 15, 2026
  • nf-labelcheck Public Forked from glormph/nf-core-labelcheck

    Proteomics nextflow labelcheck pipeline with report

    lehtiolab/nf-labelcheck’s past year of commit activity
    Nextflow 1 MIT 1 2 0 Updated Jan 14, 2026
  • ddamsproteomics Public

    A Nextflow MS DDA proteomics pipeline

    lehtiolab/ddamsproteomics’s past year of commit activity
    Nextflow 7 MIT 6 4 1 Updated Nov 21, 2025
  • nf-msconvert Public

    Leverages proteowizard's msconvert in a nextflow workflow

    lehtiolab/nf-msconvert’s past year of commit activity
    Nextflow 0 MIT 1 0 0 Updated Oct 22, 2025
  • workshop_tnbc_scilifelab_pkg Public

    Container push for workshop while docker hub is down

    lehtiolab/workshop_tnbc_scilifelab_pkg’s past year of commit activity
    0 0 0 0 Updated Oct 20, 2025
  • msstitch Public

    MS proteomics post-processing utilities

    lehtiolab/msstitch’s past year of commit activity
    Python 5 MIT 3 0 0 Updated Feb 1, 2025
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