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Fix orphaned fence specifiers#116

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leynos merged 4 commits intomainfrom
codex/fix-code-signifier-handling
Jul 21, 2025
Merged

Fix orphaned fence specifiers#116
leynos merged 4 commits intomainfrom
codex/fix-code-signifier-handling

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@leynos leynos commented Jul 21, 2025

Summary

  • ensure attach_orphan_specifiers keeps existing fence languages
  • lower-case orphaned specifiers when attaching
  • update regex for orphan lines
  • add unit and CLI tests for new behaviour

Testing

  • make fmt
  • make lint
  • make test
  • make markdownlint
  • make nixie

https://chatgpt.com/codex/tasks/task_e_687e237a9eb88322aad5e66b106e7da8

Summary by Sourcery

Improve orphaned fence specifier handling by preserving existing languages, lowercasing specifiers, and refining regex detection

Bug Fixes:

  • Prevent existing fence languages from being overwritten by orphan specifiers
  • Lowercase orphaned specifiers when attaching to fences

Enhancements:

  • Simplify ORPHAN_LANG_RE to match only word characters and commas
  • Leverage regex captures to retain indentation and existing language tags

Tests:

  • Add unit and CLI tests for orphan specifier attachment and case handling
  • Add tests to verify language preservation and avoidance of non-orphan and existing fence overrides

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sourcery-ai Bot commented Jul 21, 2025

Reviewer's Guide

Refactor fence specifier attachment in src/fences.rs to preserve existing languages, lowercase orphaned specifiers, simplify orphan regex matching, and update corresponding unit and CLI tests.

Class diagram for updated fence specifier logic in fences.rs

classDiagram
    class fences {
        +attach_orphan_specifiers(lines: &[String]) -> Vec<String>
        -FENCE_RE: Regex
        -ORPHAN_LANG_RE: Regex
    }
    fences : attach_orphan_specifiers
    fences : FENCE_RE
    fences : ORPHAN_LANG_RE
Loading

Flow diagram for attach_orphan_specifiers logic update

flowchart TD
    A[Start: Iterate lines] --> B{Line matches FENCE_RE?}
    B -- No --> C[Push line to output]
    B -- Yes --> D{In fence?}
    D -- Yes --> E[Set in_fence = false]
    D -- No --> F{Language present?}
    F -- Yes --> G[Set in_fence = true]
    F -- No --> H{Previous line is orphan specifier?}
    H -- Yes --> I[Pop orphan, push fence with lowercased orphan]
    H -- No --> J[Set in_fence = true]
    E --> C
    G --> C
    I --> C
    J --> C
    C --> A
    A --> K[End]
Loading

File-Level Changes

Change Details Files
Refactor attach_orphan_specifiers logic to handle fence detection and specifier attachment
  • Use FENCE_RE.captures to extract indentation and existing language specifier
  • Preserve and re-push fence lines when a language is already present
  • Trim preceding blank lines before attaching an orphan specifier
  • Lowercase orphaned specifiers when formatting opening fences
src/fences.rs
Simplify orphan language matching regex
  • Replace complex ORPHAN_LANG_RE pattern with word-based ^\w+(?:,\w+)*$ for clarity and performance
src/fences.rs
Update and add tests for new fence behavior
  • Change expected fence specifiers to lowercase in existing unit and CLI tests
  • Add unit test to ensure existing fence languages are preserved
  • Add CLI test for preserving existing fence specifiers
tests/fences.rs
tests/cli.rs

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Summary by CodeRabbit

  • Bug Fixes

    • Improved handling of orphan language specifiers in fenced code blocks, ensuring only valid specifiers are attached and existing ones are preserved.
    • Corrected formatting to require a blank line before attaching orphan specifiers.
  • Tests

    • Added and updated tests to cover edge cases, including language specifiers with symbols, blank line requirements, and preservation of existing specifiers.
  • Documentation

    • Minor formatting adjustment in the README for improved clarity.

Walkthrough

Streamline the detection and handling of orphaned language specifiers in fenced code blocks by adopting regex-based fence line matching and stricter language validation. Update test cases to expect lowercased language specifiers and add new tests to ensure existing fences are preserved unaltered.

Changes

File(s) Change Summary
src/fences.rs Refactor attach_orphan_specifiers to use regex for fence detection, enforce lowercased language specifiers, and clarify control flow for orphan handling.
tests/cli.rs Update test assertions to expect lowercased language specifiers; add tests verifying preservation of existing fence languages and handling of orphan specifiers with symbols and blank line conditions.
tests/fences.rs Update tests to expect lowercased language specifiers; add tests ensuring existing fences are not overwritten, orphan specifiers with symbols are attached, and invalid trailing punctuation prevents attachment.
README.md Remove a blank line preceding CLI usage code block.

Estimated code review effort

2 (10–30 minutes)

Possibly related issues

Possibly related PRs

Poem

Fences stand tall, their languages neat,
Regex now guards where code and words meet.
Orphans are gathered, their cases made small,
Tests keep them honest, lest errors befall.
With clarity reigning, the code marches on—
Markdown’s odd corners, now properly drawn!


📜 Recent review details

Configuration used: CodeRabbit UI
Review profile: ASSERTIVE
Plan: Pro

📥 Commits

Reviewing files that changed from the base of the PR and between b60bb8f and da71c35.

📒 Files selected for processing (4)
  • README.md (0 hunks)
  • src/fences.rs (3 hunks)
  • tests/cli.rs (2 hunks)
  • tests/fences.rs (4 hunks)
💤 Files with no reviewable changes (1)
  • README.md
🧰 Additional context used
📓 Path-based instructions (1)
**/*.rs

📄 CodeRabbit Inference Engine (AGENTS.md)

**/*.rs: Comments must use en-GB-oxendict spelling and grammar.
Function documentation must include clear examples.
Every module must begin with a module level (//!) comment explaining the module's purpose and utility.
Document public APIs using Rustdoc comments (///) so documentation can be generated with cargo doc.
Place function attributes after doc comments.
Do not use return in single-line functions.
Prefer immutable data and avoid unnecessary mut bindings.
Handle errors with the Result type instead of panicking where feasible.
Avoid unsafe code unless absolutely necessary and document any usage clearly.
Clippy warnings MUST be disallowed.
Lints must not be silenced except as a last resort.
Lint rule suppressions must be tightly scoped and include a clear reason.
Prefer expect over allow.
Prefer .expect() over .unwrap().
Use concat!() to combine long string literals rather than escaping newlines with a backslash.
Use predicate functions for conditional criteria with more than two branches.
Fix any warnings emitted during tests in the code itself rather than silencing them.
Where a function is too long, extract meaningfully named helper functions adhering to separation of concerns and CQRS.
Where a function has too many parameters, group related parameters in meaningfully named structs.
Where a function is returning a large error consider using Arc to reduce the amount of data returned.
Comment why, not what. Explain assumptions, edge cases, trade-offs, or complexity. Don't echo the obvious.
Use functions and composition. Avoid repetition by extracting reusable logic. Prefer generators or comprehensions, and declarative code to imperative repetition when readable.
Small, meaningful functions. Functions must be small, clear in purpose, single responsibility, and obey command/query segregation.
Name things precisely. Use clear, descriptive variable and function names. For booleans, prefer names with is, has, or should.
Structure log...

Files:

  • tests/cli.rs
  • src/fences.rs
  • tests/fences.rs

⚙️ CodeRabbit Configuration File

**/*.rs: * Seek to keep the cyclomatic complexity of functions no more than 12.

  • Adhere to single responsibility and CQRS

  • Place function attributes after doc comments.

  • Do not use return in single-line functions.

  • Move conditionals with >2 branches into a predicate function.

  • Avoid unsafe unless absolutely necessary.

  • Every module must begin with a //! doc comment that explains the module's purpose and utility.

  • Comments and docs must follow en-GB-oxendict (-ize / -our) spelling and grammar

  • Lints must not be silenced except as a last resort.

    • #[allow] is forbidden.
    • Only narrowly scoped #[expect(lint, reason = "...")] is allowed.
    • No lint groups, no blanket or file-wide suppression.
    • Include FIXME: with link if a fix is expected.
  • Use rstest fixtures for shared setup and to avoid repetition between tests.

  • Replace duplicated tests with #[rstest(...)] parameterised cases.

  • Prefer mockall for mocks/stubs.

  • Prefer .expect() over .unwrap()

  • Ensure that any API or behavioural changes are reflected in the documentation in docs/

  • Ensure that any completed roadmap steps are recorded in the appropriate roadmap in docs/

  • Files must not exceed 400 lines in length

    • Large modules must be decomposed
    • Long match statements or dispatch tables should be decomposed by domain and collocated with targets
    • Large blocks of inline data (e.g., test fixtures, constants or templates) must be moved to external files and inlined at compile-time or loaded at run-time.

Files:

  • tests/cli.rs
  • src/fences.rs
  • tests/fences.rs
🧬 Code Graph Analysis (1)
tests/fences.rs (1)
src/fences.rs (2)
  • attach_orphan_specifiers (69-111)
  • compress_fences (30-47)
🔇 Additional comments (14)
src/fences.rs (3)

14-16: Well-balanced regex refinement addressing previous concerns.

This regex pattern strikes a good balance by allowing commonly used characters (dots, hyphens, plus signs) whilst preventing trailing punctuation that could indicate malformed specifiers. The change addresses the previous reviewer feedback about restrictiveness whilst maintaining validation quality.


66-66: Documentation correctly updated to reflect lowercase normalisation.

The example now accurately demonstrates that orphan specifiers are converted to lowercase, maintaining consistency between documentation and implementation behaviour.


75-106: Excellent enhancement of orphan specifier attachment logic.

These changes significantly improve the robustness of fence handling:

  • Regex-based fence detection provides more accurate parsing than string prefix matching
  • Backward scanning over empty lines prevents interference from formatting whitespace
  • Validation requiring preceding blank lines prevents false positive attachments
  • Lowercase normalisation ensures consistent language specifier formatting
  • Early continues create cleaner control flow and reduce nesting

The implementation handles edge cases much more effectively whilst maintaining the core functionality.

tests/cli.rs (5)

196-196: Correctly updated assertion to match lowercase normalisation.

The expected output now properly reflects that orphan specifiers are converted to lowercase during attachment.


222-224: Test assertions properly updated for lowercase behaviour.

Both the fence specifier and list numbering expectations are correctly maintained, with the language specifier appropriately lowercased.


226-239: Essential test coverage for preserving existing fence languages.

This test ensures the orphan attachment logic correctly identifies and preserves fences that already have language specifiers, preventing unintended modifications.


241-254: Good coverage for language specifiers containing symbols.

This test validates that language specifiers with symbols (like "C++") are correctly handled and normalised to lowercase, addressing the regex pattern improvements.


256-270: Critical test for blank line requirement validation.

This test ensures orphan specifiers are only attached when properly isolated, preventing false positive attachments when language names appear in regular text content.

tests/fences.rs (6)

50-50: All test assertions correctly updated for lowercase normalisation.

The expected outputs now properly reflect that orphan specifiers are consistently converted to lowercase during attachment, ensuring test accuracy.

Also applies to: 57-57, 64-64, 71-71, 91-91, 95-95


81-81: Proper test data adjustment for blank line requirements.

The added blank lines ensure the test scenarios comply with the new requirement for preceding blank lines before orphan specifier attachment.

Also applies to: 94-94


118-123: Essential unit test for preserving existing fence languages.

This test directly validates that attach_orphan_specifiers correctly identifies and preserves fences with existing language specifiers, complementing the CLI-level coverage.


125-133: Important unit test for blank line requirement enforcement.

This test validates the core logic that prevents false positive attachments when potential specifiers aren't properly isolated by preceding blank lines.


135-147: Comprehensive coverage for language specifiers with symbols.

These tests validate that the refined regex pattern correctly handles common language specifier formats containing plus signs, hyphens, and dots whilst applying lowercase normalisation.


149-161: Thorough validation of trailing punctuation restrictions.

These tests ensure that the regex pattern correctly rejects specifiers with trailing punctuation, preventing attachment of potentially malformed language identifiers.

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Hey @leynos - I've reviewed your changes - here's some feedback:

  • The new ORPHAN_LANG_RE ("^\w+(?:,\w+)*$") no longer allows +, -, or . in language names, so specifiers like c++ or js-x.y won’t be attached—consider restoring those characters or otherwise handling them.
  • You’re running the fence regex against trimmed, so the captured indent will always be empty—if you need to preserve leading spaces, match against the original line instead of the trimmed one.
  • When attaching orphan specifiers you always emit exactly three backticks; to avoid changing existing fence styles you might want to reuse the original fence marker and count from the regex capture.
Prompt for AI Agents
Please address the comments from this code review:
## Overall Comments
- The new ORPHAN_LANG_RE ("^\w+(?:,\w+)*$") no longer allows `+`, `-`, or `.` in language names, so specifiers like `c++` or `js-x.y` won’t be attached—consider restoring those characters or otherwise handling them.
- You’re running the fence regex against `trimmed`, so the captured indent will always be empty—if you need to preserve leading spaces, match against the original line instead of the trimmed one.
- When attaching orphan specifiers you always emit exactly three backticks; to avoid changing existing fence styles you might want to reuse the original fence marker and count from the regex capture.

## Individual Comments

### Comment 1
<location> `src/fences.rs:14` </location>
<code_context>

-static ORPHAN_LANG_RE: LazyLock<Regex> =
-    LazyLock::new(|| Regex::new(r"^[A-Za-z0-9_+.-]+(?:,[A-Za-z0-9_+.-]+)*$").unwrap());
+static ORPHAN_LANG_RE: LazyLock<Regex> = LazyLock::new(|| Regex::new(r"^\w+(?:,\w+)*$").unwrap());

 /// Compress backtick fences to exactly three backticks.
</code_context>

<issue_to_address>
The new regex for ORPHAN_LANG_RE is more restrictive than the previous version.

The new regex excludes language specifiers with characters like '+', '.', and '-', which may affect users relying on names such as 'c++' or 'objective-c'. Please confirm if this restriction is intentional.
</issue_to_address>

### Comment 2
<location> `src/fences.rs:91` </location>
<code_context>
+                    if ORPHAN_LANG_RE.is_match(&lang_owned) {
                         out.pop();
-                        out.push(format!("```{lang}"));
+                        out.push(format!("{indent}```{}", lang_owned.to_lowercase()));
                         in_fence = true;
                         continue;
</code_context>

<issue_to_address>
Lowercasing the language specifier may cause issues for case-sensitive tools.

Consider whether normalizing the language specifier to lowercase could break compatibility with tools that distinguish between cases, such as 'C' vs 'c' or 'R' vs 'r'.
</issue_to_address>

### Comment 3
<location> `tests/cli.rs:231` </location>
<code_context>
+    let output = Command::cargo_bin("mdtablefix")
+        .expect("Failed to create cargo command for mdtablefix")
+        .arg("--fences")
+        .write_stdin("ruby\n```rust\nfn main() {}\n```\n")
+        .output()
+        .expect("Failed to execute mdtablefix command");
+    assert!(output.status.success());
+    assert_eq!(
+        String::from_utf8_lossy(&output.stdout),
+        "ruby\n```rust\nfn main() {}\n```\n"
     );
 }
</code_context>

<issue_to_address>
Consider adding a CLI test for orphaned specifiers with extra whitespace or unusual formatting.

Adding tests with leading/trailing whitespace or indented fences will help ensure the CLI handles varied input formats reliably.
</issue_to_address>

### Comment 4
<location> `src/fences.rs:14` </location>
<code_context>

-static ORPHAN_LANG_RE: LazyLock<Regex> =
-    LazyLock::new(|| Regex::new(r"^[A-Za-z0-9_+.-]+(?:,[A-Za-z0-9_+.-]+)*$").unwrap());
+static ORPHAN_LANG_RE: LazyLock<Regex> = LazyLock::new(|| Regex::new(r"^\w+(?:,\w+)*$").unwrap());

 /// Compress backtick fences to exactly three backticks.
</code_context>

<issue_to_address>
The module does not begin with a `//!` comment as required by the review instructions.

Please add a `//!` module-level comment at the top of this file to describe its purpose, as per the review instructions.
</issue_to_address>

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Comment thread src/fences.rs Outdated
Comment thread src/fences.rs Outdated
Comment thread tests/cli.rs
Comment on lines +231 to +237
.write_stdin("ruby\n```rust\nfn main() {}\n```\n")
.output()
.expect("Failed to execute mdtablefix command");
assert!(output.status.success());
assert_eq!(
String::from_utf8_lossy(&output.stdout),
"ruby\n```rust\nfn main() {}\n```\n"
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suggestion (testing): Consider adding a CLI test for orphaned specifiers with extra whitespace or unusual formatting.

Adding tests with leading/trailing whitespace or indented fences will help ensure the CLI handles varied input formats reliably.

Comment thread src/fences.rs Outdated

static ORPHAN_LANG_RE: LazyLock<Regex> =
LazyLock::new(|| Regex::new(r"^[A-Za-z0-9_+.-]+(?:,[A-Za-z0-9_+.-]+)*$").unwrap());
static ORPHAN_LANG_RE: LazyLock<Regex> = LazyLock::new(|| Regex::new(r"^\w+(?:,\w+)*$").unwrap());
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issue (review_instructions): The module does not begin with a //! comment as required by the review instructions.

Please add a //! module-level comment at the top of this file to describe its purpose, as per the review instructions.

Review instructions:

Path patterns: **/*.rs

Instructions:
Every module must begin with a //! comment.

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Actionable comments posted: 1

🔭 Outside diff range comments (1)
src/fences.rs (1)

64-64: Fix the doctest to match the lowercase conversion behaviour.

The doctest assertion expects "Rust" but the implementation now produces "rust" due to the lowercase normalisation introduced on line 91.

Update the doctest assertion:

-/// assert_eq!(fixed[0], "```Rust");
+/// assert_eq!(fixed[0], "```rust");
📜 Review details

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Review profile: ASSERTIVE
Plan: Pro

📥 Commits

Reviewing files that changed from the base of the PR and between c0121af and b60bb8f.

📒 Files selected for processing (3)
  • src/fences.rs (2 hunks)
  • tests/cli.rs (2 hunks)
  • tests/fences.rs (3 hunks)
🧰 Additional context used
📓 Path-based instructions (1)
**/*.rs

📄 CodeRabbit Inference Engine (AGENTS.md)

**/*.rs: Comments must use en-GB-oxendict spelling and grammar.
Function documentation must include clear examples.
Every module must begin with a module level (//!) comment explaining the module's purpose and utility.
Document public APIs using Rustdoc comments (///) so documentation can be generated with cargo doc.
Place function attributes after doc comments.
Do not use return in single-line functions.
Prefer immutable data and avoid unnecessary mut bindings.
Handle errors with the Result type instead of panicking where feasible.
Avoid unsafe code unless absolutely necessary and document any usage clearly.
Clippy warnings MUST be disallowed.
Lints must not be silenced except as a last resort.
Lint rule suppressions must be tightly scoped and include a clear reason.
Prefer expect over allow.
Prefer .expect() over .unwrap().
Use concat!() to combine long string literals rather than escaping newlines with a backslash.
Use predicate functions for conditional criteria with more than two branches.
Fix any warnings emitted during tests in the code itself rather than silencing them.
Where a function is too long, extract meaningfully named helper functions adhering to separation of concerns and CQRS.
Where a function has too many parameters, group related parameters in meaningfully named structs.
Where a function is returning a large error consider using Arc to reduce the amount of data returned.
Comment why, not what. Explain assumptions, edge cases, trade-offs, or complexity. Don't echo the obvious.
Use functions and composition. Avoid repetition by extracting reusable logic. Prefer generators or comprehensions, and declarative code to imperative repetition when readable.
Small, meaningful functions. Functions must be small, clear in purpose, single responsibility, and obey command/query segregation.
Name things precisely. Use clear, descriptive variable and function names. For booleans, prefer names with is, has, or should.
Structure log...

Files:

  • tests/fences.rs
  • tests/cli.rs
  • src/fences.rs

⚙️ CodeRabbit Configuration File

**/*.rs: * Seek to keep the cyclomatic complexity of functions no more than 12.

  • Adhere to single responsibility and CQRS

  • Place function attributes after doc comments.

  • Do not use return in single-line functions.

  • Move conditionals with >2 branches into a predicate function.

  • Avoid unsafe unless absolutely necessary.

  • Every module must begin with a //! doc comment that explains the module's purpose and utility.

  • Comments and docs must follow en-GB-oxendict (-ize / -our) spelling and grammar

  • Lints must not be silenced except as a last resort.

    • #[allow] is forbidden.
    • Only narrowly scoped #[expect(lint, reason = "...")] is allowed.
    • No lint groups, no blanket or file-wide suppression.
    • Include FIXME: with link if a fix is expected.
  • Use rstest fixtures for shared setup and to avoid repetition between tests.

  • Replace duplicated tests with #[rstest(...)] parameterised cases.

  • Prefer mockall for mocks/stubs.

  • Prefer .expect() over .unwrap()

  • Ensure that any API or behavioural changes are reflected in the documentation in docs/

  • Ensure that any completed roadmap steps are recorded in the appropriate roadmap in docs/

  • Files must not exceed 400 lines in length

    • Large modules must be decomposed
    • Long match statements or dispatch tables should be decomposed by domain and collocated with targets
    • Large blocks of inline data (e.g., test fixtures, constants or templates) must be moved to external files and inlined at compile-time or loaded at run-time.

Files:

  • tests/fences.rs
  • tests/cli.rs
  • src/fences.rs
🧬 Code Graph Analysis (1)
tests/fences.rs (1)
src/fences.rs (2)
  • attach_orphan_specifiers (67-106)
  • compress_fences (28-45)
🪛 GitHub Actions: CI
src/fences.rs

[error] 55-55: Doctest failure in function 'attach_orphan_specifiers': assertion left == right failed (left: "rust", right: "Rust"). Test executable failed with exit status 101.

🔇 Additional comments (10)
tests/cli.rs (3)

196-196: Test expectation correctly updated to reflect lowercase normalisation.

The change from "Rust" to "rust" aligns with the updated behaviour where orphaned language specifiers are converted to lowercase when attached to fences.


222-224: Test expectation correctly updated for consistency.

The expected output properly reflects the lowercase normalisation of the orphaned "Rust" specifier to "rust".


226-239: Valuable test addition for preserving existing fence languages.

This test ensures that the --fences option correctly preserves existing language specifiers without modification, which is crucial behaviour. The test structure follows the established pattern and validates the preservation of "rust" whilst the orphaned "ruby" line remains unchanged.

tests/fences.rs (6)

50-50: Test assertion correctly updated for lowercase normalisation.

The expected output properly reflects the new behaviour where orphaned language specifiers are converted to lowercase.


57-57: Unit test assertion updated consistently.

The expectation correctly matches the lowercase normalisation of the "Rust" orphan specifier.


64-64: Blank line handling test updated appropriately.

The test correctly expects lowercase "rust" even when there's a blank line between the orphan specifier and fence.


71-71: Combined fence compression and orphan attachment test updated.

The assertion properly reflects the lowercase normalisation when both compress_fences and attach_orphan_specifiers are applied.


90-96: Multiple orphan specifiers test updated comprehensively.

Both language specifiers are correctly expected in lowercase ("rust" and "python"), demonstrating consistent normalisation across multiple orphaned specifiers.


116-121: Essential test addition for fence preservation behaviour.

This test validates that attach_orphan_specifiers does not modify existing fenced code blocks with language specifiers. The test properly verifies that "ruby" remains as an orphan line whilst the existing "```rust" fence is preserved unchanged. This behaviour is crucial for maintaining existing fence specifications.

src/fences.rs (1)

73-101: Function refactoring improves correctness and control flow.

The refactored attach_orphan_specifiers function correctly uses regex captures for fence detection and implements proper state management with explicit continue statements. The lowercase conversion of orphaned specifiers (line 91) provides consistent normalisation. The logic properly preserves existing fence language specifiers by only processing fences where lang_present.is_empty().

Comment thread src/fences.rs Outdated
@leynos leynos merged commit 8654109 into main Jul 21, 2025
1 check passed
@leynos leynos deleted the codex/fix-code-signifier-handling branch July 21, 2025 13:23
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