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Modification to ClassifyDataLoader #1

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@i-gayo i-gayo commented Jun 20, 2021

Currently saved as ClassifyDataLoader_v2 incase there's any bugs/things to check before using as the main DataLoader for classification.

sophmrtn and others added 30 commits June 17, 2021 19:25
@sophmrtn
Adds learning rate scheduling options
31d7745
@qijqij
add code for tensorboard for both models
43c8f90
@qijqij
fix bugs in code relevant to tensorboard
d742df9
@qijqij
remove unnecessary comment in train.py while adding tensorboard code
671be7f
@liamchalcroft
Send precision and recall values to cpu
64cdd6b
@liamchalcroft
Split up CLI stuff
93b60da
@liamchalcroft
Merge pull request #1 from Jiongqi/main
d29207c 
Merge tensorboard stuff (thank you @jiongqi!)
@i-gayo
Modified ClassifyDataLoader, but saved as v2 for proof-checking
a6304e2
@liamchalcroft
Remove unused args in cli tools
8fe2026
@liamchalcroft
change class loader to Iani new class
182e3ef
@liamchalcroft
Add lr_schedule to CLI train
2b09a3a
@liamchalcroft
Set tensorboard logs to outdir/runs
2db8bfe
@liamchalcroft
Define log_dir explicitly in summarywriter
226cf26
@liamchalcroft
Add summarywriter init to ClassTrainer
bd6bd2e
@liamchalcroft
add device def to trainer in CLI
e9bda1d
@liamchalcroft
Add device def to other CLI scripts
3154147
@liamchalcroft
Add tensorboard compatibility with ensemble
a356cc6
@liamchalcroft
Set lr_schedule to every epoch
a8e72c8
@liamchalcroft
Add modification to handle affine and flip
c1ecd53
@liamchalcroft
Drop empty dim in input,label after affine
f366fd9
@liamchalcroft
Re-try for fix of affine forward
612a5a0
@liamchalcroft
Remove indexing line (prev commit)
5481963
@liamchalcroft
Binarise label after applying warps
a9bfb9a
@liamchalcroft
Fix binarise in dice loss
cb1ba53
@liamchalcroft
Add qsub scripts
3326aa8
@liamchalcroft
Add TODO of Iani suggestion
81821f3
@i-gayo
Added print("cuda available" to check GPU is used
c4f0bf2
@i-gayo
Added print statements to check code runs on CANDI
cd26223
@i-gayo
Added cuda_visible_devices to use the GPU
6b538c9
@i-gayo
Removed os.environ line to avoid bugs with GPU
8438907
i-gayo and others added 30 commits June 25, 2021 09:40
@i-gayo
Changed AffineTransform to rotation of 5 degrees only
4467b28
@qijqij
remove labelling type combination manually
62d3174
@i-gayo
Changed values from None to 0 and 1 for scaling
5a09894
@qijqij
fix the z_score bracket bug
ba80f01
@liamchalcroft
Add CLI arg for early stopping
11ad5cf
@sophmrtn
fixes lr bug
4449249
@sophmrtn
Merge branch 'main' of https://github.com/sophmrtn/RectAngle into main
b2f8e89
@liamchalcroft
Fix tensorboard metric outputs
2af797d
@liamchalcroft
Make classifier optional in test.py
947b48a
@liamchalcroft
Fix bug in test.py
91f3e47
@liamchalcroft
Fix compatibility with weights on CPU
d72bbdc
@liamchalcroft
Set classifier default=False
ea3376d
@liamchalcroft
FIx defaults for class stuff in test.py
c287245
@liamchalcroft
Fix eval() in trainer test
9636da1
@liamchalcroft
Improve plot settings for testing
15c83d6
@liamchalcroft
Adjust test.py to new settings
25126ac
@sophmrtn
adding plot example function
007909d
@sophmrtn
Merge branch 'main' of https://github.com/sophmrtn/RectAngle into main
521441e 
Conflicts:
	src/rectangle/utils/train.py
@liamchalcroft
Reduce frequency of plotting stuff in test
02e3472
@liamchalcroft
Merge branch 'main' of https://github.com/sophmrtn/RectAngle
97a4be7
@sophmrtn
add weighted bce custom loss
9998007
@liamchalcroft
Add logging of positive and negatives to test
3a2efbc 
Also fixed contour plot
@liamchalcroft
Merge branch 'main' of https://github.com/sophmrtn/RectAngle
3ab39d1
@liamchalcroft
Fix typo in test.py
da7014c
@sophmrtn
correcting loss
306eec6
@qijqij
Update README.md
d44a112
@sophmrtn
updating legend sizes and linewidth for plot_example
c29b12c
@sophmrtn
Merge branch 'main' of https://github.com/sophmrtn/RectAngle into main
a052bd7
@sophmrtn
Update README.md
d72fa6c
@sophmrtn
Update README.md
941138f
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4 participants

@i-gayo @sophmrtn @qijqij @liamchalcroft