results of running inst/deprecate.R

[maelle]

Current roxygen2 warnings indicate a bit more work is needed

• find what to do about aliases. for instance, with the use of aliases, which_loop() isn't really documented anywhere. I think it should be properly documented first?
• make the use of inheritParams dependent on whether there are params.

Warning messages:
1: @inherits failed in topic "is.loop".
✖ Can't find topic "which_loop".
2: @inherits failed in topic "has.multiple".
✖ Can't find topic "any_multiple".
3: @inherits failed in topic "count.multiple".
✖ Can't find topic "count_multiple".
4: @inherits failed in topic "bipartite.projection.size".
✖ Can't find topic "bipartite_projection_size".
5: @inherits failed in topic "largest.cliques".
✖ Can't find topic "largest_cliques".
6: @inherits failed in topic "clique.number".
✖ Can't find topic "clique_num".
7: @inherits failed in topic "edge.betweenness.estimate".
✖ Can't find topic "estimate_edge_betweenness".
8: @inherits failed in topic "closeness.estimate".
✖ Can't find topic "estimate_closeness".
9: @inherits failed in topic "maximal.cliques.count".
✖ Can't find topic "count_max_cliques".
10: @inherits failed in topic "largest.independent.vertex.sets".
✖ Can't find topic "largest_ivs".
11: @inherits failed in topic "maximal.independent.vertex.sets".
✖ Can't find topic "maximal_ivs".
12: @inherits failed in topic "independence.number".
✖ Can't find topic "ivs_size".
13: @inherits failed in topic "graph.cohesion".
✖ Can't find topic "cohesion".
14: @inheritParams failed in topic "igraph.console".
✖ All parameters are already documented; none remain to be inherited.
15: @inherits failed in topic "edge.disjoint.paths".
✖ Can't find topic "edge_disjoint_paths".
16: @inherits failed in topic "vertex.disjoint.paths".
✖ Can't find topic "vertex_disjoint_paths".
17: @inherits failed in topic "graph.adhesion".
✖ Can't find topic "adhesion".
18: @inherits failed in topic "get.diameter".
✖ Can't find topic "get_diameter".
19: @inherits failed in topic "farthest.nodes".
✖ Can't find topic "farthest_vertices".
20: @inheritParams failed in topic "igraphtest".
✖ All parameters are already documented; none remain to be inherited.
21: @inheritParams failed in topic "igraph.version".
✖ All parameters are already documented; none remain to be inherited.
22: @inheritParams failed in topic "tkplot.off".
✖ All parameters are already documented; none remain to be inherited.