==BactImAs ==

BactImAs is an open-source multi platform java application intended to assist the researcher in tracking various organisms in sequences of images and obtaining and visualizing their quantitative data.
You can find documentation, binaries, tutorials, etc. at our wiki page: http://homer.zpr.fer.hr/bactimas




== Not for the developers ==

This is a all-in-one project for developing both Plugin and Standalone version of Bactimas.
Therefore, you must first install Icy plugin for Eclipse as explained here: 
	http://icy.bioimageanalysis.org/index.php?display=startDevWithIcy

	
  
	

== Dependencies ==

Bactimas uses the following libs (as a source code):

  * OpenCSV: 	http://opencsv.sourceforge.net/
  * Convex hull algorithm library by Glenn Hudson and Matt Duckham: http://www.geosensor.net/phpws/index.php?module=pagemaster&PAGE_user_op=view_page&PAGE_id=13&MMN_position=20:15

and additional jars (which are also baked in the plugin jar):

  * xerial's sqlite jdbc driver:	https://bitbucket.org/xerial/sqlite-jdbc
  * log4j:	http://logging.apache.org/log4j/
  * ImageJ: http://imagej.nih.gov/ij/