Switch from javax to jakarta, upgrade dependencies

build.gradle

@@ -23,7 +23,7 @@ plugins {
     id 'org.beryx.jlink' version '2.25.0'
     id 'jacoco'
     id 'net.ltgt.errorprone' version '2.0.2'
-    id 'org.sonarqube' version '3.3'
+    id 'org.sonarqube' version '3.4.0.2513'
     id 'org.ysb33r.cloudci' version '3.0.0'
     id 'com.github.hierynomus.license' version '0.16.1'
     id 'io.miret.etienne.sass' version '1.4.1'
@@ -51,10 +51,10 @@ dependencies {
     testImplementation 'org.hamcrest:hamcrest:2.2'
 
     // Mockito https://mvnrepository.com/artifact/org.mockito/mockito-inline
-    testImplementation 'org.mockito:mockito-inline:4.6.1'
+    testImplementation 'org.mockito:mockito-inline:4.7.0'
 
     // Mockito-Junit https://mvnrepository.com/artifact/org.mockito/mockito-junit-jupiter
-    testImplementation 'org.mockito:mockito-junit-jupiter:4.6.1'
+    testImplementation 'org.mockito:mockito-junit-jupiter:4.7.0'
 
     // Commons Collections https://mvnrepository.com/artifact/org.apache.commons/commons-collections4
     implementation 'org.apache.commons:commons-collections4:4.4'
@@ -77,22 +77,25 @@ dependencies {
     implementation 'com.google.code.gson:gson:2.9.1'
 
     // Jersey REST client https://mvnrepository.com/artifact/org.glassfish.jersey.core/jersey-client
-    implementation 'org.glassfish.jersey.core:jersey-client:2.32'
+    implementation 'org.glassfish.jersey.core:jersey-client:3.0.6'
 
     // HK2 InjectionManager https://mvnrepository.com/artifact/org.glassfish.jersey.inject/jersey-hk2
-    implementation 'org.glassfish.jersey.inject:jersey-hk2:2.32'
+    implementation 'org.glassfish.jersey.inject:jersey-hk2:3.0.6'
 
     // Jersey Multipart https://mvnrepository.com/artifact/org.glassfish.jersey.media/jersey-media-multipart
-    implementation 'org.glassfish.jersey.media:jersey-media-multipart:2.32'
+    implementation 'org.glassfish.jersey.media:jersey-media-multipart:3.0.6'
+
+    // Jaxb runtime https://mvnrepository.com/artifact/org.glassfish.jaxb/jaxb-runtime
+    implementation 'org.glassfish.jaxb:jaxb-runtime:4.0.0'
 
     // Mimepull https://mvnrepository.com/artifact/org.jvnet.mimepull/mimepull
-    implementation 'org.jvnet.mimepull:mimepull:1.9.13'
+    implementation 'org.jvnet.mimepull:mimepull:1.10.0'
 
     // Xml bind https://mvnrepository.com/artifact/jakarta.xml.bind/jakarta.xml.bind-api
-    implementation 'jakarta.xml.bind:jakarta.xml.bind-api:2.3.3'
+    implementation 'jakarta.xml.bind:jakarta.xml.bind-api:4.0.0'
 
-    // Jaxb runtime https://mvnrepository.com/artifact/org.glassfish.jaxb/jaxb-runtime
-    implementation 'org.glassfish.jaxb:jaxb-runtime:2.3.3'
+    // https://mvnrepository.com/artifact/jakarta.ws.rs/jakarta.ws.rs-api
+    implementation 'jakarta.ws.rs:jakarta.ws.rs-api:3.1.0'
 }
 
 javafx {

src/main/java/com/github/mfl28/boundingboxeditor/controller/Controller.java

@@ -59,8 +59,8 @@
 import javafx.util.Pair;
 import org.glassfish.jersey.media.multipart.MultiPartFeature;
 
-import javax.ws.rs.client.Client;
-import javax.ws.rs.client.ClientBuilder;
+import jakarta.ws.rs.client.Client;
+import jakarta.ws.rs.client.ClientBuilder;
 import java.io.File;
 import java.io.IOException;
 import java.nio.file.Files;

src/main/java/com/github/mfl28/boundingboxeditor/model/io/restclients/BoundingBoxPredictorClient.java

@@ -18,7 +18,7 @@
  */
 package com.github.mfl28.boundingboxeditor.model.io.restclients;
 
-import javax.ws.rs.client.Client;
+import jakarta.ws.rs.client.Client;
 import java.io.InputStream;
 import java.security.InvalidParameterException;
 import java.util.List;

src/main/java/com/github/mfl28/boundingboxeditor/model/io/restclients/GsonMessageBodyHandler.java

@@ -21,10 +21,10 @@
 import com.google.gson.*;
 import com.google.gson.reflect.TypeToken;
 
-import javax.ws.rs.core.MediaType;
-import javax.ws.rs.core.MultivaluedMap;
-import javax.ws.rs.ext.MessageBodyReader;
-import javax.ws.rs.ext.MessageBodyWriter;
+import jakarta.ws.rs.core.MediaType;
+import jakarta.ws.rs.core.MultivaluedMap;
+import jakarta.ws.rs.ext.MessageBodyReader;
+import jakarta.ws.rs.ext.MessageBodyWriter;
 import java.io.*;
 import java.lang.annotation.Annotation;
 import java.lang.reflect.Type;

src/main/java/com/github/mfl28/boundingboxeditor/model/io/restclients/TorchServeRestClient.java

@@ -23,14 +23,14 @@
 import org.glassfish.jersey.media.multipart.MultiPart;
 import org.glassfish.jersey.media.multipart.file.StreamDataBodyPart;
 
-import javax.ws.rs.ProcessingException;
-import javax.ws.rs.client.Client;
-import javax.ws.rs.client.Entity;
-import javax.ws.rs.client.Invocation;
-import javax.ws.rs.client.WebTarget;
-import javax.ws.rs.core.GenericType;
-import javax.ws.rs.core.MediaType;
-import javax.ws.rs.core.Response;
+import jakarta.ws.rs.ProcessingException;
+import jakarta.ws.rs.client.Client;
+import jakarta.ws.rs.client.Entity;
+import jakarta.ws.rs.client.Invocation;
+import jakarta.ws.rs.client.WebTarget;
+import jakarta.ws.rs.core.GenericType;
+import jakarta.ws.rs.core.MediaType;
+import jakarta.ws.rs.core.Response;
 import java.io.IOException;
 import java.io.InputStream;
 import java.net.ConnectException;

src/main/java/com/github/mfl28/boundingboxeditor/ui/ObjectTreeElementCell.java

@@ -363,11 +363,11 @@ && getItem() instanceof Toggle && ((Toggle) getItem()).isSelected()) {
 
     @SuppressWarnings("UnnecessaryLambda")
     private ChangeListener<Boolean> createBoundingShapeVisibilityListener() {
-        return ((observable, oldValue, newValue) -> {
+        return (observable, oldValue, newValue) -> {
             if(!Boolean.TRUE.equals(newValue)) {
                 contextMenu.hide();
             }
-        });
+        };
     }
 
     private MenuItem createDeleteBoundingShapeMenuItem() {

src/main/java/module-info.java

@@ -29,7 +29,10 @@
     requires com.google.gson;
     requires jersey.client;
     requires jersey.common;
-    requires java.ws.rs;
+    requires jakarta.ws.rs;
+    requires jakarta.inject;
+    requires jakarta.annotation;
+    requires jakarta.activation;
     requires javafx.swing;
     requires jersey.media.multipart;
     requires org.jvnet.mimepull;
@@ -39,6 +42,6 @@
     opens com.github.mfl28.boundingboxeditor.model.io to javafx.base, com.google.gson;
     opens com.github.mfl28.boundingboxeditor.model.io.results to javafx.base, com.google.gson;
     opens com.github.mfl28.boundingboxeditor.model.io.restclients to javafx.base, com.google.gson;
-    exports com.github.mfl28.boundingboxeditor.model.io.restclients to hk2.locator;
+    exports com.github.mfl28.boundingboxeditor.model.io.restclients to org.glassfish.hk2.locator;
     exports com.github.mfl28.boundingboxeditor to javafx.graphics;
 }

src/test/java/com/github/mfl28/boundingboxeditor/controller/TorchServeClientTest.java

@@ -47,14 +47,14 @@
 import org.testfx.matcher.control.TextInputControlMatchers;
 import org.testfx.util.WaitForAsyncUtils;
 
-import javax.ws.rs.ProcessingException;
-import javax.ws.rs.client.Client;
-import javax.ws.rs.client.ClientBuilder;
-import javax.ws.rs.client.Invocation;
-import javax.ws.rs.client.WebTarget;
-import javax.ws.rs.core.GenericType;
-import javax.ws.rs.core.MediaType;
-import javax.ws.rs.core.Response;
+import jakarta.ws.rs.ProcessingException;
+import jakarta.ws.rs.client.Client;
+import jakarta.ws.rs.client.ClientBuilder;
+import jakarta.ws.rs.client.Invocation;
+import jakarta.ws.rs.client.WebTarget;
+import jakarta.ws.rs.core.GenericType;
+import jakarta.ws.rs.core.MediaType;
+import jakarta.ws.rs.core.Response;
 import java.io.File;
 import java.net.ConnectException;
 import java.util.ArrayList;