Segmentation Error

[cap-jmk]

When executing your example on macOS Big Sur, I receive the following error.

START PROCESSING
Experiment mode: fine_tuning

Current data being processed: chembl24_cleaned_unique_canon.txt
Size of the dataset after pruning by length and check with RDKit: 365063
Start data analysis
1 descriptors for 365063 mols were calculated in 13.6 seconds.
run_processing.sh: line 9: 59568 Segmentation fault: 11  python do_data_processing.py --filename $FILENAME --verbose True

[michael1788]

Hum, it seems that's a problem with Big Sur (https://stackoverflow.com/questions/64841082/segmentation-fault-11-python-after-upgrading-to-os-big-sur). I suggest you try the solution in this post, i.e. in this case I would remove the virtual env of the project, and create a new one from scratch.