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Original file line number Diff line number Diff line change
Expand Up @@ -47,7 +47,7 @@ public interface AcquisitionSettingsScape extends AcquisitionSettings {
*
* @return immutable DefaultSliceSettings instance.
*/
DefaultSliceSettings slice();
SliceSettings slice();

/**
* Returns the immutable DefaultScanSettings instance.
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Original file line number Diff line number Diff line change
Expand Up @@ -5,6 +5,7 @@
import com.google.gson.JsonDeserializer;
import org.micromanager.lightsheetmanager.api.AcquisitionSettings;
import org.micromanager.lightsheetmanager.api.ChannelSettings;
import org.micromanager.lightsheetmanager.api.SliceSettings;
import org.micromanager.lightsheetmanager.api.StageScanSettings;
import org.micromanager.lightsheetmanager.model.DataStorage;

Expand Down Expand Up @@ -230,6 +231,11 @@ public static <T extends AcquisitionSettings> T fromJson(final String json, fina
// This forces Gson to use the concrete implementation class
return context.deserialize(jsonElement, DefaultChannelSettings.class);
})
.registerTypeAdapter(SliceSettings.class, (JsonDeserializer<SliceSettings>)
(jsonElement, typeOfT, context) -> {
// This forces Gson to use the concrete implementation class
return context.deserialize(jsonElement, DefaultSliceSettings.class);
})
.create();
return gson.fromJson(json, cls);
}
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Original file line number Diff line number Diff line change
Expand Up @@ -16,6 +16,11 @@ private DefaultSliceSettings(Builder builder) {
periodMinimized_ = builder.periodMinimized_;
}

// Note: used by GSON library for deserialization
private DefaultSliceSettings() {
this(new Builder());
}

public static Builder builder() {
return new Builder();
}
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Original file line number Diff line number Diff line change
Expand Up @@ -203,7 +203,7 @@ public Builder fromNegativeDirection(final boolean state) {
}

@Override
public StageScanSettings build() {
public DefaultStageScanSettings build() {
return new DefaultStageScanSettings(this);
}

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Original file line number Diff line number Diff line change
Expand Up @@ -2,6 +2,7 @@

import org.micromanager.lightsheetmanager.api.AcquisitionSettingsScape;
import org.micromanager.lightsheetmanager.api.ChannelSettings;
import org.micromanager.lightsheetmanager.api.SliceSettings;
import org.micromanager.lightsheetmanager.api.StageScanSettings;
import org.micromanager.lightsheetmanager.api.data.AcquisitionMode;
import org.micromanager.lightsheetmanager.api.data.CameraData;
Expand All @@ -18,7 +19,7 @@ public static class Builder extends BaseAcquisitionSettings.Builder<Builder> imp
private ChannelSettings.Builder channelBuilder_ = DefaultChannelSettings.builder();
private DefaultTimingSettings.Builder timingBuilder_ = DefaultTimingSettings.builder();
private DefaultVolumeSettings.Builder volumeBuilder_ = DefaultVolumeSettings.builder();
private DefaultSliceSettings.Builder sliceBuilder_ = DefaultSliceSettings.builder();
private SliceSettings.Builder sliceBuilder_ = DefaultSliceSettings.builder();
private StageScanSettings.Builder stageScanBuilder_ = DefaultStageScanSettings.builder();
private DefaultSheetCalibration.Builder sheetCalibBuilder_ = DefaultSheetCalibration.builder();
private DefaultSliceCalibration.Builder sliceCalibBuilder_ = DefaultSliceCalibration.builder();
Expand Down Expand Up @@ -191,7 +192,7 @@ public DefaultVolumeSettings.Builder volumeBuilder() {
return volumeBuilder_;
}

public DefaultSliceSettings.Builder sliceBuilder() {
public SliceSettings.Builder sliceBuilder() {
return sliceBuilder_;
}

Expand Down Expand Up @@ -236,7 +237,7 @@ public String toString() {
private final ChannelSettings channels_;
private final DefaultTimingSettings timing_;
private final DefaultVolumeSettings volume_;
private final DefaultSliceSettings slice_;
private final SliceSettings slice_;
private final StageScanSettings stageScan_;
private final DefaultSheetCalibration sheetCalibration_;
private final DefaultSliceCalibration sliceCalibration_;
Expand All @@ -260,7 +261,7 @@ private ScapeAcquisitionSettings(Builder builder) {
channels_ = builder.channelBuilder().build();
timing_ = builder.timingBuilder_.build();
volume_ = builder.volumeBuilder_.build();
slice_ = builder.sliceBuilder_.build();
slice_ = builder.sliceBuilder().build();
stageScan_ = builder.stageScanBuilder().build();
sheetCalibration_ = builder.sheetCalibBuilder_.build();
sliceCalibration_ = builder.sliceCalibBuilder_.build();
Expand Down Expand Up @@ -322,7 +323,7 @@ public DefaultVolumeSettings volume() {
* @return immutable DefaultSliceSettings instance.
*/
@Override
public DefaultSliceSettings slice() {
public SliceSettings slice() {
return slice_;
}

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Original file line number Diff line number Diff line change
@@ -1,7 +1,7 @@
package org.micromanager.lightsheetmanager.gui.tabs.acquisition;

import org.micromanager.lightsheetmanager.api.SliceSettings;
import org.micromanager.lightsheetmanager.api.data.CameraMode;
import org.micromanager.lightsheetmanager.api.internal.DefaultSliceSettings;
import org.micromanager.lightsheetmanager.gui.components.CheckBox;
import org.micromanager.lightsheetmanager.gui.components.Label;
import org.micromanager.lightsheetmanager.gui.components.Panel;
Expand Down Expand Up @@ -45,7 +45,7 @@ private void createUserInterface() {
"[]5[]"
);

final DefaultSliceSettings sliceSettings = model_.acquisitions().settings().slice();
final SliceSettings sliceSettings = model_.acquisitions().settings().slice();
final boolean isSlicePeriodMinimized = sliceSettings.periodMinimized();

// regular panel
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