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(WIP) Add annotation WDL files#22

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scanon wants to merge 7 commits intomicrobiomedata:masterfrom
scanon:annotation
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(WIP) Add annotation WDL files#22
scanon wants to merge 7 commits intomicrobiomedata:masterfrom
scanon:annotation

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@scanon scanon commented Mar 23, 2020

Baseline copy of IMG annotation workflow

- Switch DBs to String to avoid localization
- Switch from getting the WDLs to local (will switch back)
- Remove references to output
- Minor cleanup
the WDL.  Also remove any pieces that are for isolates which we
won't be supporting.
@scanon scanon changed the title Add annotation WDL files (WIP) Add annotation WDL files Mar 23, 2020
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