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@larsoner larsoner commented Oct 7, 2022

Over in mne-bids-pipeline I'm trying to squash all warnings, but I get:

mne_bids_pipeline/scripts/preprocessing/_05a_apply_ica.py:122: RuntimeWarning:
The data you passed to ICA.apply() was baseline-corrected. Please note that ICA can introduce
DC shifts, therefore you may wish to consider baseline-correcting the cleaned data again.

This adds a on_baseline='warn' that we can set to on_baseline='reapply' to avoid this and reapply the baseline after ica.apply. Internally report.add_ica will always use on_baseline='reapply' for ica.plot_overlay, but in principle we could expose this as a parameter.

Okay for you @agramfort ?

@larsoner larsoner added this to the 1.2 milestone Oct 7, 2022
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@larsoner I let you merge if the CI failures are expected. 🙏

@larsoner larsoner enabled auto-merge (squash) October 9, 2022 18:09
@larsoner larsoner merged commit 0a0e00f into mne-tools:main Oct 9, 2022
@larsoner larsoner deleted the ica branch October 9, 2022 18:59
larsoner added a commit to larsoner/mne-python that referenced this pull request Oct 11, 2022
* upstream/main:
  BUG: Avoid warning in report.add_ica (mne-tools#11232)
  testing new features of website theme [circle deploy] (mne-tools#11033)
  BUG: Fix regression with run_subprocess (mne-tools#11230)
  DOC:  fix mne-kit-gui package name (mne-tools#11231)
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2 participants