MAINT: Add Numba to 3.13 test

doc/changes/devel/12656.bugfix.rst

@@ -1 +1 @@
-Fix bug where :func:`mne.export.export_raw` does not correct for recording start time (`raw.first_time`) when exporting Raw instances to EDF or EEGLAB formats, by `Qian Chu`_.
+Fix bug where :func:`mne.export.export_raw` does not correct for recording start time (:attr:`raw.first_time <mne.io.Raw.first_time>`) when exporting Raw instances to EDF or EEGLAB formats, by `Qian Chu`_.

mne/export/_export.py

@@ -22,14 +22,16 @@ def export_raw(
     """Export Raw to external formats.
 
     %(export_fmt_support_raw)s
+
     %(export_warning)s
 
     .. warning::
         When exporting ``Raw`` with annotations, ``raw.info["meas_date"]`` must be the
         same as ``raw.annotations.orig_time``. This guarantees that the annotations are
-        in the same reference frame as the samples.
-        When `Raw.first_time` is not zero (e.g., after cropping), the onsets are
-        automatically corrected so that onsets are always relative to the first sample.
+        in the same reference frame as the samples. When
+        :attr:`Raw.first_time <mne.io.Raw.first_time>` is not zero (e.g., after
+        cropping), the onsets are automatically corrected so that onsets are always
+        relative to the first sample.
 
     Parameters
     ----------

mne/forward/tests/test_make_forward.py

@@ -482,7 +482,7 @@ def test_make_forward_solution_openmeeg(n_layers):
         eeg_atol=100,
         meg_corr_tol=0.98,
         eeg_corr_tol=0.98,
-        meg_rdm_tol=0.1,
+        meg_rdm_tol=0.11,
         eeg_rdm_tol=0.2,
     )
 

mne/preprocessing/tests/test_fine_cal.py

@@ -231,7 +231,7 @@ def test_fine_cal_systems(system, tmp_path):
         err_limit = 6000
         n_ref = 28
         corrs = (0.19, 0.41, 0.49)
-        sfs = [0.5, 0.7, 0.9, 1.5]
+        sfs = [0.5, 0.7, 0.9, 1.55]
         corr_tol = 0.55
     elif system == "fil":
         raw = read_raw_fil(fil_fname, verbose="error")

mne/utils/docs.py

@@ -1494,19 +1494,22 @@ def _reflow_param_docstring(docstring, has_first_line=True, width=75):
 
 docdict["export_fmt_support_epochs"] = """\
 Supported formats:
-    - EEGLAB (``.set``, uses :mod:`eeglabio`)
+
+- EEGLAB (``.set``, uses :mod:`eeglabio`)
 """
 
 docdict["export_fmt_support_evoked"] = """\
 Supported formats:
-    - MFF (``.mff``, uses :func:`mne.export.export_evokeds_mff`)
+
+- MFF (``.mff``, uses :func:`mne.export.export_evokeds_mff`)
 """
 
 docdict["export_fmt_support_raw"] = """\
 Supported formats:
-    - BrainVision (``.vhdr``, ``.vmrk``, ``.eeg``, uses `pybv <https://github.com/bids-standard/pybv>`_)
-    - EEGLAB (``.set``, uses :mod:`eeglabio`)
-    - EDF (``.edf``, uses `edfio <https://github.com/the-siesta-group/edfio>`_)
+
+- BrainVision (``.vhdr``, ``.vmrk``, ``.eeg``, uses `pybv <https://github.com/bids-standard/pybv>`_)
+- EEGLAB (``.set``, uses :mod:`eeglabio`)
+- EDF (``.edf``, uses `edfio <https://github.com/the-siesta-group/edfio>`_)
 """  # noqa: E501
 
 docdict["export_warning"] = """\

tools/github_actions_dependencies.sh

@@ -23,7 +23,7 @@ if [ ! -z "$CONDA_ENV" ]; then
 elif [[ "${MNE_CI_KIND}" == "pip" ]]; then
 	# Only used for 3.13 at the moment, just get test deps plus a few extras
 	# that we know are available
-	INSTALL_ARGS="nibabel scikit-learn numpydoc PySide6 mne-qt-browser pandas h5io mffpy defusedxml"
+	INSTALL_ARGS="nibabel scikit-learn numpydoc PySide6 mne-qt-browser pandas h5io mffpy defusedxml numba"
 	INSTALL_KIND="test"
 else
 	test "${MNE_CI_KIND}" == "pip-pre"

tools/github_actions_env_vars.sh

@@ -28,7 +28,7 @@ else  # conda-like
         echo "MNE_LOGGING_LEVEL=warning" | tee -a $GITHUB_ENV
         echo "MNE_QT_BACKEND=PySide6" | tee -a $GITHUB_ENV
         # TODO: Also need "|unreliable on GitHub Actions conda" on macOS, but omit for now to make sure the failure actually shows up
-        echo "MNE_TEST_ALLOW_SKIP=.*(Requires (spm|brainstorm) dataset|CUDA not|PySide6 causes segfaults).*" | tee -a $GITHUB_ENV
+        echo "MNE_TEST_ALLOW_SKIP=.*(Requires (spm|brainstorm) dataset|CUDA not|PySide6 causes segfaults|Accelerate|Flakey verbose behavior).*" | tee -a $GITHUB_ENV
     fi
 fi
 set +x