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Issue 13193: test failures with scipy 1.15.0 - sph_harm deprecation bug fixed #13200
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| rtol=1e-5, | ||
| atol=1e-3, |
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Were these tolerance changes necessary? They seem suprisingly lenient... would have expected at least rtol=1e-12, atol=1e-14 or similar
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You're right — the looser tolerances may not be necessary. I'll revert to tighter values (e.g., rtol=1e-12, atol=1e-14) to maintain higher precision in the tests.
| try: | ||
| from scipy.special import sph_harm_y as sph_harm_func | ||
| except ImportError: | ||
| from scipy.special import sph_harm as sph_harm_func |
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Hmmm the point of having a thing in .fixes was to avoid exactly the type of code duplication that has now been put back in. Instead of a try/except sort of thing (which used to be accomplished with a in special.__dict__) in one place, we now have it in two. I'd rather keep the correct fix in mne/fixes.py and use it multiple places
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Thanks for pointing that out — you're absolutely right. I overlooked the original intent behind centralizing the fix in mne/fixes.py. I’ll refactor the code to avoid duplication and ensure the fix is reused consistently from that module.
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Looks like this has already been fixed in |
Got it, thanks for the heads up! I’ll go ahead and close this PR then. Appreciate you pointing that out 😊. Also, I’ll keep an eye out for other open issues I can help with. |
Reference issue
Fixes #13193
What does this implement/fix?
This PR resolves the
ImportErrorcaused by the deprecation ofscipy.special.sph_harm_yin recent versions of SciPy.sph_harm_yif available, or fallback tosph_harmassph_harm_func.sph_harm_ywere replaced withsph_harm_functo maintain compatibility.test_spherical_conversions) were updated to usesph_harm_funcand validate both positive and negative order harmonics.Additional information
pytestusingmne.datasets.testing.data_path(force_update=True)to ensure full test coverage.