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drammock merged 3 commits into from
Jul 3, 2019
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DOC: add list of side-packages #6522

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DOC: add list of side-packages
drammock Jul 3, 2019
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drammock Jul 3, 2019
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add MNELAB; fix long lines
drammock Jul 3, 2019
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39 changes: 35 additions & 4 deletions doc/install/pre_install.rst
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Original file line number Diff line number Diff line change
Expand Up @@ -28,10 +28,27 @@ Overview of the MNE tools suite
- :doc:`MNE-CPP <../mne_cpp>` provides core MNE functionality implemented in
C++ and is primarily intended for embedded and real-time applications.

There are also Python tools for easily importing MEG data from the Human
Connectome Project for use with MNE-Python (`MNE-HCP`_), and tools for
managing MNE projects so that they comply with the
`Brain Imaging Data Structure`_ specification (`MNE-BIDS`_).
There is also a growing ecosystem of other Python packages that work alongside
MNE-Python, including packages for:

- a graphical user interface for MNE-Python (`MNELAB`_)
- easily importing MEG data from the Human Connectome Project for
use with MNE-Python (`MNE-HCP`_)
- managing MNE projects so that they comply with the `Brain
Imaging Data Structure`_ specification (`MNE-BIDS`_)
- automatic bad channel detection and interpolation (`autoreject`_)
- convolutional sparse dictionary learning and waveform shape estimation
(`alphaCSC`_)
- independent component analysis (ICA) with good performance on real data
(`PICARD`_)
- phase-amplitude coupling (`pactools`_)
- representational similarity analysis (`rsa`_)
- microstate analysis (`microstate`_)
- connectivity analysis using dynamic imaging of coherent sources (DICS)
(`conpy`_)
- general-purpose statistical analysis of M/EEG data (`eelbrain`_)
- post-hoc modification of linear models (`posthoc`_)


What should I install?
^^^^^^^^^^^^^^^^^^^^^^
Expand Down Expand Up @@ -69,3 +86,17 @@ simplify your example script to only the elements necessary to replicate the
bug.

**Next:** :doc:`mne_python`


.. LINKS:

.. _MNELAB: https://github.com/cbrnr/mnelab
.. _autoreject: https://autoreject.github.io/
.. _alphaCSC: https://alphacsc.github.io/
.. _picard: https://pierreablin.github.io/picard/
.. _pactools: https://pactools.github.io/
.. _rsa: https://github.com/wmvanvliet/rsa
.. _microstate: https://github.com/wmvanvliet/mne_microstates
.. _conpy: https://aaltoimaginglanguage.github.io/conpy/
.. _eelbrain: https://eelbrain.readthedocs.io/en/stable/index.html
.. _posthoc: https://users.aalto.fi/~vanvlm1/posthoc/python/