ci: add workflow to test flopy-based MODFLOW 6 tests

.github/workflows/ci-mf6.yml

@@ -0,0 +1,106 @@
+name: flopy mf6 CI
+
+on:
+  schedule:
+    - cron: '0 8 * * *' # run at 8 AM UTC (12 am PST)
+  push:
+    branches:
+      - master
+      - develop
+      - 'release*'
+  pull_request:
+    branches: [master, develop]
+
+jobs:
+
+  flopymf6CI:
+    name: mf6 flopy autotests
+    runs-on: ubuntu-latest
+    strategy:
+      fail-fast: false
+    defaults:
+      run:
+        shell: bash
+
+    steps:
+    # check out repo
+    - name: Checkout flopy repo
+      uses:  actions/checkout@v2.3.4
+
+    - name: Get branch name
+      uses: nelonoel/branch-name@v1.0.1
+
+    - name: Setup Python 3.9
+      uses: actions/setup-python@v2.2.2
+      with:
+        python-version: 3.9
+
+    - name: Install Python 3.9 packages
+      run: |
+        python -m pip install --upgrade pip
+        pip install -r etc/requirements.pip.txt
+
+    - name: Install pymake, xmipy, modflowapi, and flopy
+      run: |
+        python -m pip install --upgrade pip
+        pip install https://github.com/modflowpy/flopy/zipball/develop
+        pip install https://github.com/modflowpy/pymake/zipball/master
+        pip install https://github.com/Deltares/xmipy/zipball/develop
+        pip install https://github.com/MODFLOW-USGS/modflowapi/zipball/develop
+        pip install . --use-feature=in-tree-build
+
+    - name: Setup symbolic links on Linux
+      run: |
+        sudo ln -fs /usr/bin/gfortran-10 /usr/local/bin/gfortran
+        sudo ln -fs /usr/bin/gcc-10 /usr/local/bin/gcc
+        sudo ln -fs /usr/bin/g++-10 /usr/local/bin/g++
+
+    - name: Print GNU compiler versions
+      run: |
+        gfortran --version
+        gcc --version
+        g++ --version
+
+    - name: Clone MODFLOW 6 repo
+      run: |
+        git clone https://github.com/MODFLOW-USGS/modflow6.git modflow6
+
+    - name: Update flopy MODFLOW 6 classes
+      working-directory: ./modflow6/autotest
+      run: |
+        python update_flopy.py
+
+    - name: Install meson
+      run: |
+        pip install meson ninja
+
+    - name: Setup modflow
+      working-directory: ./modflow6
+      run: |
+        meson setup builddir --buildtype=debugoptimized --prefix=$(pwd) --libdir=bin
+
+    - name: Build modflow
+      working-directory: ./modflow6
+      run: |
+        meson compile -C builddir
+
+    - name: Install modflow
+      working-directory: ./modflow6
+      run: |
+        meson install -C builddir
+
+    - name: Get executables
+      working-directory: ./modflow6/autotest
+      run: |
+        pytest -v --durations=0 get_exes.py
+
+    - name: Run pytest
+      working-directory: ./modflow6/autotest
+      run: |
+        pytest -v -n auto -k "test_gw" --durations=0 --cov=flopy --cov-report=xml
+
+    - name: Upload coverage to Codecov
+      uses: codecov/codecov-action@v2.1.0
+      with:
+        directory: ./modflow6/autotest
+        file: coverage.xml

.github/workflows/ci.yml

@@ -183,6 +183,6 @@ jobs:
         --cover-xml-file=../coverage.xml -w ./autotest ${{ matrix.test-path }}
 
     - name: Upload coverage to Codecov
-      uses: codecov/codecov-action@v1.0.15
+      uses: codecov/codecov-action@v2.1.0
       with:
         file: ./coverage.xml

etc/requirements.pip.txt

@@ -8,3 +8,6 @@ requests
 appdirs
 numpy
 matplotlib
+pytest
+pytest-xdist
+pytest-cov