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jdhughes-dev merged 3 commits into from
Sep 1, 2020
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refactor(Modpath): refactor Modpath to Modpath6 #987

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6194ea7
refactor(Modpath): refactor Modpath to Modpath6
jdhughes-dev Aug 31, 2020
1fb0849
refactor(Modpath): refactor Modpath to Modpath6
jdhughes-dev Aug 31, 2020
d5eadcb
refactor(Modpath): refactor Modpath to Modpath6
jdhughes-dev Aug 31, 2020
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258 changes: 70 additions & 188 deletions .docs/code.rst
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Original file line number Diff line number Diff line change
Expand Up @@ -10,165 +10,76 @@ MODFLOW 6 Base Packages
Contents:

.. toctree::
:maxdepth: 2
:glob:
:maxdepth: 4

./source/flopy.mf6.mfbase
./source/flopy.mf6.mfmodel
./source/flopy.mf6.mfpackage
./source/flopy.mf6.mf*

MODFLOW 6 Packages
^^^^^^^^^^^^^^^^^^

MODFLOW 6 Simulation Packages
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^

Contents:

.. toctree::
:maxdepth: 2
:maxdepth: 4

./source/flopy.mf6.modflow.mfsimulation
./source/flopy.mf6.modflow.mfgnc
./source/flopy.mf6.modflow.mfgwf
./source/flopy.mf6.modflow.mfgwfchd
./source/flopy.mf6.modflow.mfgwfcsub
./source/flopy.mf6.modflow.mfgwfdis
./source/flopy.mf6.modflow.mfgwfdisu
./source/flopy.mf6.modflow.mfgwfdisv
./source/flopy.mf6.modflow.mfgwfdrn
./source/flopy.mf6.modflow.mfgwfevt
./source/flopy.mf6.modflow.mfgwfevta
./source/flopy.mf6.modflow.mfgwfghb
./source/flopy.mf6.modflow.mfgwfgnc
./source/flopy.mf6.modflow.mfgwfgwf
./source/flopy.mf6.modflow.mfgwfhfb
./source/flopy.mf6.modflow.mfgwfic
./source/flopy.mf6.modflow.mfgwflak
./source/flopy.mf6.modflow.mfgwfmaw
./source/flopy.mf6.modflow.mfgwfmvr
./source/flopy.mf6.modflow.mfgwfnam
./source/flopy.mf6.modflow.mfgwfnpf
./source/flopy.mf6.modflow.mfgwfoc
./source/flopy.mf6.modflow.mfgwfrch
./source/flopy.mf6.modflow.mfgwfrcha
./source/flopy.mf6.modflow.mfgwfriv
./source/flopy.mf6.modflow.mfgwfsfr
./source/flopy.mf6.modflow.mfgwfsto
./source/flopy.mf6.modflow.mfgwfuzf
./source/flopy.mf6.modflow.mfgwfwel
./source/flopy.mf6.modflow.mfims
./source/flopy.mf6.modflow.mfmvr
./source/flopy.mf6.modflow.mfnam
./source/flopy.mf6.modflow.mftdis
./source/flopy.mf6.modflow.mfutlobs
./source/flopy.mf6.modflow.mfutllaktab
./source/flopy.mf6.modflow.mfutltas
./source/flopy.mf6.modflow.mfutlts


Previous Versions of MODFLOW
----------------------------

MODFLOW Base Classes
^^^^^^^^^^^^^^^^^^^^
MODFLOW 6 Groundwater Flow Packages
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^

Contents:

.. toctree::
:maxdepth: 2
:glob:
:maxdepth: 4

./source/flopy.mbase
./source/flopy.pakbase
./source/flopy.mf6.modflow.mfgwf*


MODFLOW Model Classes
^^^^^^^^^^^^^^^^^^^^^
MODFLOW 6 Utilities
^^^^^^^^^^^^^^^^^^^

Contents:

.. toctree::
:maxdepth: 2
:glob:
:maxdepth: 4

./source/flopy.modflow.mf
./source/flopy.modpath.mp
./source/flopy.mt3d.mt
./source/flopy.seawat.swt
./source/flopy.mf6.modflow.mfutl*


MODFLOW Packages
^^^^^^^^^^^^^^^^

Contents:
Previous Versions of MODFLOW
----------------------------

.. toctree::
:maxdepth: 2

./source/flopy.modflow.mfbas
./source/flopy.modflow.mfbcf
./source/flopy.modflow.mfchd
./source/flopy.modflow.mfde4
./source/flopy.modflow.mfdis
./source/flopy.modflow.mfdrn
./source/flopy.modflow.mfdrt
./source/flopy.modflow.mfevt
./source/flopy.modflow.mffhb
./source/flopy.modflow.mfflwob
./source/flopy.modflow.mfhfb
./source/flopy.modflow.mfhob
./source/flopy.modflow.mfhyd
./source/flopy.modflow.mfgage
./source/flopy.modflow.mfghb
./source/flopy.modflow.mfgmg
./source/flopy.modflow.mflak
./source/flopy.modflow.mflmt
./source/flopy.modflow.mflpf
./source/flopy.modflow.mfmnw1
./source/flopy.modflow.mfmnw2
./source/flopy.modflow.mfmnwi
./source/flopy.modflow.mfnwt
./source/flopy.modflow.mfoc
./source/flopy.modflow.mfpbc
./source/flopy.modflow.mfpcg
./source/flopy.modflow.mfpcgn
./source/flopy.modflow.mfrch
./source/flopy.modflow.mfriv
./source/flopy.modflow.mfsfr2
./source/flopy.modflow.mfsip
./source/flopy.modflow.mfsms
./source/flopy.modflow.mfsor
./source/flopy.modflow.mfstr
./source/flopy.modflow.mfsub
./source/flopy.modflow.mfswi2
./source/flopy.modflow.mfswr1
./source/flopy.modflow.mfswt
./source/flopy.modflow.mfupw
./source/flopy.modflow.mfuzf1
./source/flopy.modflow.mfwel
./source/flopy.modflow.mfaddoutsidefile


MODFLOW-LGR Packages
MODFLOW Base Classes
^^^^^^^^^^^^^^^^^^^^

Contents:

.. toctree::
:maxdepth: 2
:maxdepth: 4

./source/flopy.modflowlgr.mflgr
./source/flopy.mbase
./source/flopy.pakbase


MODPATH Packages
MODFLOW Packages
^^^^^^^^^^^^^^^^

Contents:

.. toctree::
:maxdepth: 2
:glob:
:maxdepth: 4

./source/flopy.modpath.mp7
./source/flopy.modpath.mp7bas
./source/flopy.modpath.mp7particledata
./source/flopy.modpath.mp7particlegroup
./source/flopy.modpath.mp7sim
./source/flopy.modpath.mpbas
./source/flopy.modpath.mpsim
./source/flopy.modflow.mf*


MT3DMS Packages
Expand All @@ -177,44 +88,46 @@ MT3DMS Packages
Contents:

.. toctree::
:maxdepth: 2

./source/flopy.mt3d.mtadv
./source/flopy.mt3d.mtbtn
./source/flopy.mt3d.mtdsp
./source/flopy.mt3d.mtgcg
./source/flopy.mt3d.mtlkt
./source/flopy.mt3d.mtphc
./source/flopy.mt3d.mtrct
./source/flopy.mt3d.mtsft
./source/flopy.mt3d.mtssm
./source/flopy.mt3d.mttob
./source/flopy.mt3d.mtuzt
./source/flopy.mt3d.mtcts
:glob:
:maxdepth: 4

./source/flopy.mt3d.mt*


SEAWAT Packages
^^^^^^^^^^^^^^^

Contents:

.. toctree::
:maxdepth: 2
:glob:
:maxdepth: 4

./source/flopy.seawat.swtvdf
./source/flopy.seawat.swtvsc
./source/flopy.seawat.swt*


MODFLOW-USG Packages
^^^^^^^^^^^^^^^^^^^^
MODPATH 7 Packages
^^^^^^^^^^^^^^^^^^

Contents:

.. toctree::
:maxdepth: 2
:glob:
:maxdepth: 4

./source/flopy.modflow.mfbct
./source/flopy.modflow.mfdisu
./source/flopy.modflow.mfsms
./source/flopy.modpath.mp7*


MODPATH 6 Packages
^^^^^^^^^^^^^^^^^^

Contents:

.. toctree::
:glob:
:maxdepth: 4

./source/flopy.modpath.mp6*


Flopy Utilities
Expand All @@ -226,82 +139,51 @@ Model Utilities (including binary file readers)
Contents:

.. toctree::
:maxdepth: 2

./source/flopy.utils.check
./source/flopy.utils.cvfdutil
./source/flopy.utils.datafile
./source/flopy.utils.binaryfile
./source/flopy.utils.flopy_io
./source/flopy.utils.formattedfile
./source/flopy.utils.geometry
./source/flopy.utils.gridgen
./source/flopy.utils.gridintersect
./source/flopy.utils.lgrutil
./source/flopy.utils.mflistfile
./source/flopy.utils.mfreadnam
./source/flopy.utils.mfgrdfile
./source/flopy.utils.modpathfile
./source/flopy.utils.mtlistfile
./source/flopy.utils.observationfile
./source/flopy.utils.postprocessing
./source/flopy.utils.rasters
./source/flopy.utils.swroutputfile
./source/flopy.utils.reference
./source/flopy.utils.sfroutputfile
./source/flopy.utils.triangle
./source/flopy.utils.util_array
./source/flopy.utils.utils_def
./source/flopy.utils.util_list
./source/flopy.utils.zonbud
:glob:
:maxdepth: 4

./source/flopy.utils.*


Plotting Utilities
^^^^^^^^^^^^^^^^^^
Contents:

.. toctree::
:maxdepth: 2
:glob:
:maxdepth: 4

./source/flopy.plot.map
./source/flopy.plot.crosssection
./source/flopy.plot.plotutil
./source/flopy.plot.*


Export Utilities
^^^^^^^^^^^^^^^^
Contents:

.. toctree::
:maxdepth: 2
:glob:
:maxdepth: 4

./source/flopy.export.metadata
./source/flopy.export.netcdf
./source/flopy.export.shapefile_utils
./source/flopy.export.utils
./source/flopy.export.vtk
./source/flopy.export.*


PEST Utilities
^^^^^^^^^^^^^^
Contents:

.. toctree::
:maxdepth: 2
:glob:
:maxdepth: 4

./source/flopy.pest.*

./source/flopy.pest.params
./source/flopy.pest.templatewriter
./source/flopy.pest.tplarray

Discretization Utilities
^^^^^^^^^^^^^^^^^^^^^^^^
Contents:

.. toctree::
:maxdepth: 2
:glob:
:maxdepth: 4

./source/flopy.discretization.grid
./source/flopy.discretization.structuredgrid
./source/flopy.discretization.vertexgrid
./source/flopy.discretization.unstructuredgrid
./source/flopy.discretization.modeltime
./source/flopy.discretization.*
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