Skip to content
Merged
Changes from all commits
Commits
File filter

Filter by extension

Filter by extension


Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
55 changes: 31 additions & 24 deletions .github/workflows/ci.yml
Original file line number Diff line number Diff line change
Expand Up @@ -82,30 +82,6 @@ jobs:
env:
DOCKER_DEFAULT_PLATFORM: ${{ matrix.platform }}

# Run pathogen repo CI builds with the final image
test-pathogen-repo-ci:
needs: build
strategy:
# XXX TODO: Test on multiple platforms via the matrix too, as above?
matrix:
include:
- { pathogen: avian-flu, build-args: auspice/flu_avian_h5n1_ha.json }
- { pathogen: ebola }
- { pathogen: lassa }
- { pathogen: monkeypox }
- { pathogen: mumps }
- { pathogen: ncov, build-args: all_regions -j 2 --profile nextstrain_profiles/nextstrain-ci }
- { pathogen: seasonal-flu, build-args: --configfile profiles/ci/builds.yaml -p }
- { pathogen: zika }
name: test-pathogen-repo-ci (${{ matrix.pathogen }})
uses: nextstrain/.github/.github/workflows/pathogen-repo-ci.yaml@master
with:
repo: nextstrain/${{ matrix.pathogen }}
build-args: ${{ matrix.build-args }}
env: |
NEXTSTRAIN_DOCKER_IMAGE: ghcr.io/nextstrain/base:${{ needs.build.outputs.tag }}
continue-on-error: true

validate-platforms:
name: Validate platforms
needs: build
Expand Down Expand Up @@ -173,6 +149,37 @@ jobs:
run: |
./devel/copy-images -i ghcr.io -o docker.io -t ${{ needs.build.outputs.tag }} -l

# Run pathogen repo CI builds with the final image
test-pathogen-repo-ci:
# Only one of push-{branch,build} runs for any given workflow run, and
# we're ok with either of them.
needs: [build, push-branch, push-build]
if: |2
success()
|| needs.push-branch.result == 'success'
|| needs.push-build.result == 'success'
strategy:
# XXX TODO: Test on multiple platforms via the matrix too, as above?
matrix:
include:
- { pathogen: avian-flu, build-args: auspice/flu_avian_h5n1_ha.json }
- { pathogen: ebola }
- { pathogen: lassa }
- { pathogen: monkeypox }
- { pathogen: mumps }
- { pathogen: ncov, build-args: all_regions -j 2 --profile nextstrain_profiles/nextstrain-ci }
- { pathogen: seasonal-flu, build-args: --configfile profiles/ci/builds.yaml -p }
- { pathogen: zika }
name: test-pathogen-repo-ci (${{ matrix.pathogen }})
uses: nextstrain/.github/.github/workflows/pathogen-repo-ci.yaml@master
with:
repo: nextstrain/${{ matrix.pathogen }}
build-args: ${{ matrix.build-args }}
env: |
NEXTSTRAIN_DOCKER_IMAGE: nextstrain/base:${{ needs.build.outputs.tag }}
continue-on-error: true
secrets: inherit

# Delete the builder and final images from GitHub Container Registry.
cleanup-registry:
if: always()
Expand Down