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Sync vendored scripts#40

Merged
joverlee521 merged 6 commits intomasterfrom
victorlin/sync-vendored
Oct 10, 2023
Merged

Sync vendored scripts#40
joverlee521 merged 6 commits intomasterfrom
victorlin/sync-vendored

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@victorlin
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@victorlin victorlin commented Sep 14, 2023

Description of proposed changes

There are new scripts in nextstrain/ingest. I did a quick check and none of them are used in this repo. Doesn't hurt to pull them in anyways.

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The last reference was removed in 8b11a7a.
The last reference was removed in 53f0296.
Something funny happened where 7e0ea00
was rebased as-is (instead of re-applying), so the parent commit in git
subrepo's internal file was not referencing something on the default
branch. This caused `git subrepo pull` to not work.

Manually editing the internal file so that `git subrepo pull` can work
again.
subrepo:
  subdir:   "ingest/vendored"
  merged:   "c97df23"
upstream:
  origin:   "https://github.com/nextstrain/ingest"
  branch:   "main"
  commit:   "c97df23"
git-subrepo:
  version:  "0.4.6"
  origin:   "https://github.com/ingydotnet/git-subrepo"
  commit:   "110b9eb"
@victorlin victorlin self-assigned this Sep 14, 2023
subrepo:
  subdir:   "ingest/vendored"
  merged:   "c02fa81"
upstream:
  origin:   "https://github.com/nextstrain/ingest"
  branch:   "main"
  commit:   "c02fa81"
git-subrepo:
  version:  "0.4.6"
  origin:   "https://github.com/ingydotnet/git-subrepo"
  commit:   "110b9eb"
@joverlee521
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Ah, just realized the last sync I did in d0e00ab pulls in transform-strain-name which does get used in this repo. I'll update to replace it here.

@joverlee521
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joverlee521 commented Oct 3, 2023

Waiting on trial run of ingest

Edit: Trial run completed successfully and uploaded outputs to s3://nextstrain-data/files/workflows/rsv/trial/sync-vendored/. Compared trial output metadata TSV files with production metadata TSV files and found no difference.

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Merging since the trial run worked as expected.

@joverlee521 joverlee521 merged commit 7a69d83 into master Oct 10, 2023
@joverlee521 joverlee521 deleted the victorlin/sync-vendored branch October 10, 2023 17:48
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2 participants