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Add module bolt/reml#11011

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lyh970817 wants to merge 8 commits intonf-core:masterfrom
lyh970817:modules/bolt-reml-create
Draft

Add module bolt/reml#11011
lyh970817 wants to merge 8 commits intonf-core:masterfrom
lyh970817:modules/bolt-reml-create

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@lyh970817 lyh970817 commented Mar 22, 2026

PR checklist

BOLT-LMM is a GWAS and mixed-model association toolkit for large-scale cohorts. This PR adds the new bolt/reml nf-core module so pipelines can run BOLT-LMM REML heritability estimation workflows in a standards-compliant, reusable DSL2 component.
The test suite reuses existing nf-core/test-datasets inputs and setup-generated derivatives, so no companion test-data PR was required for this submission.

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the module conventions in the contribution docs
  • If necessary, include test data in your PR.
  • Remove all TODO statements.
  • Broadcast software version numbers to topic: versions - See version_topics
  • Follow the naming conventions.
  • Follow the parameters requirements.
  • Follow the input/output options guidelines.
  • Add a resource label
  • Use BioConda and BioContainers if possible to fulfil software requirements.
  • Ensure that the test works with either Docker / Singularity. Conda CI tests can be quite flaky:
    • For modules:
      • nf-core modules test bolt/reml --profile docker
      • nf-core modules test bolt/reml --profile singularity
      • nf-core modules test bolt/reml --profile conda

@lyh970817 lyh970817 marked this pull request as draft March 22, 2026 10:47
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