Open
Conversation
mashehu
approved these changes
Oct 20, 2025
Comment on lines
+14
to
+15
| - maxulysse | ||
| - |
Contributor
There was a problem hiding this comment.
Suggested change
| - maxulysse | |
| - | |
| - mashehu |
Comment on lines
+11
to
+12
| - maxulysse | ||
| - |
Contributor
There was a problem hiding this comment.
Suggested change
| - maxulysse | |
| - | |
| - maxulysse |
Comment on lines
+28
to
+29
| nextflowVersions: | ||
| - ">=25.04.0 <25.04.3" |
Contributor
There was a problem hiding this comment.
i don't think this is dependent on Nextflow
| - ">=25.04.0 <25.04.3" | ||
| references: | ||
| - title: snpeff issue regarding change of hosting location of cache and binaries | ||
| description: Issues reporting the issue with snpeff download after the change of hosting location |
Contributor
There was a problem hiding this comment.
Suggested change
| description: Issues reporting the issue with snpeff download after the change of hosting location | |
| description: GitHub issue about the problem with snpeff download after the change of hosting location |
|
|
||
| # Issue | ||
|
|
||
| https://github.com/pcingola/SnpEff/issues/602 |
Contributor
There was a problem hiding this comment.
not needed. will be added at the end
Suggested change
| https://github.com/pcingola/SnpEff/issues/602 |
| snpeff download is broken with older versions of sarek/rnavar due to changes in location for the storage of snpeff cache. | ||
| snpeff download works with newer versions of sarek/rnavar with an updated of snpeff, but cache 105 is now not valid anymore (hopefully until a fix comes). | ||
|
|
||
| -> https://github.com/pcingola/SnpEff/issues/609 |
Contributor
There was a problem hiding this comment.
Suggested change
| -> https://github.com/pcingola/SnpEff/issues/609 |
❌ Deploy Preview for nf-core-main-site failed. Why did it fail? →
|
Comment on lines
+17
to
+22
| - name: sarek | ||
| versions: | ||
| - 2.12.0 | ||
| - name: rnavar | ||
| versions: | ||
| - 4.2.0 |
Contributor
There was a problem hiding this comment.
are these versions correct?
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
@netlify /advisories/snpeff_change_location