Multi-threading implemented at the extension step#8
Open
JFsanchezherrero wants to merge 3 commits intonsoranzo:mainfrom
Open
Multi-threading implemented at the extension step#8JFsanchezherrero wants to merge 3 commits intonsoranzo:mainfrom
JFsanchezherrero wants to merge 3 commits intonsoranzo:mainfrom
Conversation
JFsanchezherrero
changed the title
Owner
|
@JFsanchezherrero Can you remove the source files of the CPAN modules ( |
Owner
|
For your information I've just added some basic Continuous Integration testing using TravisCI, but to use it you would need to rebase this PR on top of the |
Author
|
I have discarded CPAN modules but I am afraid that you should tell the user to have it installed in their computer as it would not run properly. |
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
2 participants
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
At the contig extension step, I have add some code to split the given fasta file in as many CPUs as expected and send multiple threads for each block of data.
As new requirements SSPACE needs the perl module Parallel and Cwd. They have also been included in this commit.