Attribute 'threshold' not being read

[brmagalis]

Hello!

I am trying to run the script in a virtual environment with the older version of python (2.7), which may have something to do with it, but I am receiving the following error and am not familiar enough with python to run with it:

(temp-python)$ python2 netstruct.py -c netstruct_infile.hdf5 0 1 0.05 2
Processing command: netstruct_infile.hdf5 0 1 0.05 2 None
Running command: netstruct_infile.hdf5 0.0 1.0 0.05 2 Community_Detection_Results
Output filename: Community_Detection_Results
Traceback (most recent call last):
File "netstruct.py", line 497, in
main(args)
File "netstruct.py", line 400, in main
,algorithm_num,args.loopGDmat_results)
File "netstruct.py", line 229, in loopGDmat
graph = FindCommunities(data_fname,threshold,algorithm_num)
File "netstruct.py", line 167, in FindCommunities
matx=stats.threshold(GDmatrix, threshmin=threshold,newval=0) # Creates an adjacency matrix with a threshold applied to GDmatrix (i.e. all values below the threshold are taken to be 0)
AttributeError: 'module' object has no attribute 'threshold'

[CheWeiChang1992]

Hello,
I also confronted the same error when trying to use NetStruct.

I found that the problem is actually due to the version of scipy.
The 'threshold' has been deprecated since scipy 0.17!
You can try to downgrade your scipy to version 0.16 like this:
sudo python -m pip install 'scipy>0.15,<0.17' --force-reinstall

It will be good to put this issue in the user manual

Cheers!