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deprecated Sci-pi function #3

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deprecated Sci-pi function #3

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7 changes: 5 additions & 2 deletions netstruct.py
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Original file line number Diff line number Diff line change
Expand Up @@ -164,7 +164,10 @@ def FindCommunities(fname,threshold=0.0,algorithm_num=6):
6 : leading.eigenvector.community -> returns VertexClustering object.
"""
area,ind,GDmatrix=loadGDmatrix(fname)
matx=stats.threshold(GDmatrix, threshmin=threshold,newval=0) # Creates an adjacency matrix with a threshold applied to GDmatrix (i.e. all values below the threshold are taken to be 0)
# matx=stats.threshold(GDmatrix, threshmin=threshold,newval=0) # Creates an adjacency matrix with a threshold applied to GDmatrix (i.e. all values below the threshold are taken to be 0)
matx = GDmatrix
matx[matx<threshold] = 0

graph = igraph.Graph.Weighted_Adjacency(matx.tolist(),attr="weight",mode="UPPER")#Creates an undirected weighted igraph graph object with the adjacency matrix
graph["name"] = "NetStruck Weighted Graph with threshold={0}".format(threshold)
graph.vs["area"]=area
Expand Down Expand Up @@ -494,4 +497,4 @@ def add_parser_arguments(parser):
parser = ArgumentParser(prog='PROG', usage='%(prog)s [options]')
parser = add_parser_arguments(parser)
args = parser.parse_args()
main(args)
main(args)