feat: enable --cfg and --dataflow by default on builds

README.md

@@ -208,8 +208,8 @@ Full agent setup: [AI Agent Guide](docs/guides/ai-agent-guide.md) · [CLAU
 | 📋 | **Composite audit** | Single `audit` command combining explain + impact + health metrics per function — one call instead of 3-4 |
 | 🚦 | **Triage queue** | `triage` merges connectivity, hotspots, roles, and complexity into a ranked audit priority queue |
 | 📦 | **Batch querying** | Accept a list of targets and return all results in one JSON payload — enables multi-agent parallel dispatch |
-| 🔬 | **Dataflow analysis** | Track how data moves through functions with `flows_to`, `returns`, and `mutates` edges — opt-in via `build --dataflow` (JS/TS) |
-| 🧩 | **Control flow graph** | Intraprocedural CFG construction for all 11 languages — `cfg` command with text/DOT/Mermaid output, opt-in via `build --cfg` |
+| 🔬 | **Dataflow analysis** | Track how data moves through functions with `flows_to`, `returns`, and `mutates` edges — included by default (JS/TS), skip with `--no-dataflow` |
+| 🧩 | **Control flow graph** | Intraprocedural CFG construction for all 11 languages — `cfg` command with text/DOT/Mermaid output, included by default, skip with `--no-cfg` |
 | 🔎 | **AST node querying** | Stored queryable AST nodes (calls, `new`, string, regex, throw, await) — `ast` command with SQL GLOB pattern matching |
 | 🧬 | **Expanded node/edge types** | `parameter`, `property`, `constant` node kinds with `parent_id` for sub-declaration queries; `contains`, `parameter_of`, `receiver` edge kinds |
 | 📊 | **Exports analysis** | `exports <file>` shows all exported symbols with per-symbol consumers, re-export detection, and counts |
@@ -327,7 +327,7 @@ codegraph ast -k call                 # Filter by kind: call, new, string, regex
 codegraph ast -k throw --file src/    # Combine kind and file filters
 ```
 
-> **Note:** Dataflow requires `codegraph build --dataflow` (JS/TS only). CFG requires `codegraph build --cfg`. Both are opt-in to keep default builds fast.
+> **Note:** Dataflow (JS/TS only) and CFG are included by default. Use `--no-dataflow` / `--no-cfg` for faster builds.
 
 ### Audit, Triage & Batch
 

src/builder.js

@@ -522,9 +522,9 @@ export async function buildGraph(rootDir, opts = {}) {
   }
 
   if (!isFullBuild && parseChanges.length === 0 && removed.length === 0) {
-    // Check if optional analysis was requested but never computed
+    // Check if default analyses were never computed (e.g. legacy DB)
     const needsCfg =
-      opts.cfg &&
+      opts.cfg !== false &&
       (() => {
         try {
           return db.prepare('SELECT COUNT(*) as c FROM cfg_blocks').get().c === 0;
@@ -533,16 +533,10 @@ export async function buildGraph(rootDir, opts = {}) {
         }
       })();
     const needsDataflow =
-      opts.dataflow &&
+      opts.dataflow !== false &&
       (() => {
         try {
-          return (
-            db
-              .prepare(
-                "SELECT COUNT(*) as c FROM edges WHERE kind IN ('flows_to','returns','mutates')",
-              )
-              .get().c === 0
-          );
+          return db.prepare('SELECT COUNT(*) as c FROM dataflow').get().c === 0;
         } catch {
           return true;
         }
@@ -1271,8 +1265,8 @@ export async function buildGraph(rootDir, opts = {}) {
   }
   _t.complexityMs = performance.now() - _t.complexity0;
 
-  // Opt-in CFG analysis (--cfg)
-  if (opts.cfg) {
+  // CFG analysis (skip with --no-cfg)
+  if (opts.cfg !== false) {
     _t.cfg0 = performance.now();
     try {
       const { buildCFGData } = await import('./cfg.js');
@@ -1283,8 +1277,8 @@ export async function buildGraph(rootDir, opts = {}) {
     _t.cfgMs = performance.now() - _t.cfg0;
   }
 
-  // Opt-in dataflow analysis (--dataflow)
-  if (opts.dataflow) {
+  // Dataflow analysis (skip with --no-dataflow)
+  if (opts.dataflow !== false) {
     _t.dataflow0 = performance.now();
     try {
       const { buildDataflowEdges } = await import('./dataflow.js');
@@ -1387,6 +1381,7 @@ export async function buildGraph(rootDir, opts = {}) {
       rolesMs: +_t.rolesMs.toFixed(1),
       complexityMs: +_t.complexityMs.toFixed(1),
       ...(_t.cfgMs != null && { cfgMs: +_t.cfgMs.toFixed(1) }),
+      ...(_t.dataflowMs != null && { dataflowMs: +_t.dataflowMs.toFixed(1) }),
     },
   };
 }

src/cfg.js

@@ -1241,7 +1241,8 @@ export function cfgData(name, customDbPath, opts = {}) {
     return {
       name,
       results: [],
-      warning: 'No CFG data found. Run `codegraph build --cfg` first.',
+      warning:
+        'No CFG data found. Rebuild with `codegraph build` (CFG is now included by default).',
     };
   }
 

src/cli.js

@@ -105,8 +105,8 @@ program
   .command('build [dir]')
   .description('Parse repo and build graph in .codegraph/graph.db')
   .option('--no-incremental', 'Force full rebuild (ignore file hashes)')
-  .option('--dataflow', 'Extract data flow edges (flows_to, returns, mutates)')
-  .option('--cfg', 'Build intraprocedural control flow graphs')
+  .option('--no-dataflow', 'Skip data flow edge extraction')
+  .option('--no-cfg', 'Skip control flow graph building')
   .action(async (dir, opts) => {
     const root = path.resolve(dir || '.');
     const engine = program.opts().engine;

src/dataflow.js

@@ -734,7 +734,8 @@ export function dataflowData(name, customDbPath, opts = {}) {
     return {
       name,
       results: [],
-      warning: 'No dataflow data found. Run `codegraph build --dataflow` first.',
+      warning:
+        'No dataflow data found. Rebuild with `codegraph build` (dataflow is now included by default).',
     };
   }
 
@@ -876,7 +877,8 @@ export function dataflowPathData(from, to, customDbPath, opts = {}) {
       from,
       to,
       found: false,
-      warning: 'No dataflow data found. Run `codegraph build --dataflow` first.',
+      warning:
+        'No dataflow data found. Rebuild with `codegraph build` (dataflow is now included by default).',
     };
   }
 
@@ -1005,7 +1007,8 @@ export function dataflowImpactData(name, customDbPath, opts = {}) {
     return {
       name,
       results: [],
-      warning: 'No dataflow data found. Run `codegraph build --dataflow` first.',
+      warning:
+        'No dataflow data found. Rebuild with `codegraph build` (dataflow is now included by default).',
     };
   }
 

src/mcp.js

@@ -638,7 +638,7 @@ const BASE_TOOLS = [
   },
   {
     name: 'cfg',
-    description: 'Show intraprocedural control flow graph for a function. Requires build --cfg.',
+    description: 'Show intraprocedural control flow graph for a function.',
     inputSchema: {
       type: 'object',
       properties: {
@@ -658,7 +658,7 @@ const BASE_TOOLS = [
   },
   {
     name: 'dataflow',
-    description: 'Show data flow edges or data-dependent blast radius. Requires build --dataflow.',
+    description: 'Show data flow edges or data-dependent blast radius.',
     inputSchema: {
       type: 'object',
       properties: {