Repositories list

• scRNA-seq_python_course_2024

  Public
  Course materials for EBI course scRNA-seq analysis in Python, 2024

  Jupyter Notebook

  •99 forks•88 stars•11 issue•00 pull requests•Updated Feb 6, 2026Feb 6, 2026

• data_science_2025

  Public
  This contains materials for the Data Science for Life Scientists 2025 course

  Jupyter Notebook

  •00 forks•22 stars•00 issues•00 pull requests•Updated Jul 10, 2025Jul 10, 2025

• scrnaseq_python_2023

  Public
  Materials for the EBI course "Single-cell RNA-seq analysis using Python 2023"

  Jupyter Notebook

  •33 forks•88 stars•00 issues•00 pull requests•Updated Nov 17, 2023Nov 17, 2023

• CATD

  Public
  CATD: Critical Assessment of Transcriptomics Deconvolution

  benchmarkingscrna-seqdeconvolution+ 1

  benchmarkingscrna-seqdeconvolutionbulk-rna-seq

  R

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  MIT License

  •00 forks•11 star•00 issues•00 pull requests•Updated Sep 16, 2021Sep 16, 2021

• cross-species-cellgroup-comparison

  Public
  Development project for comparing cell groupings between experiments across species

  Python

  •22 forks•11 star•00 issues•00 pull requests•Updated Mar 26, 2021Mar 26, 2021

• eQTL

  Public
  eQTL analysis pipeline

  Python

  •11 fork•44 stars•66 issues•00 pull requests•Updated Jul 3, 2019Jul 3, 2019

• single_lib_qc

  Public
  HTML

  •

  GNU General Public License v3.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 1, 2018Mar 1, 2018

• atlas_gsa

  Public
  Gene set analysis based on fisher exact test

  R

  •

  GNU Lesser General Public License v3.0

  •22 forks•22 stars•00 issues•00 pull requests•Updated Oct 26, 2017Oct 26, 2017

• pancancer

  Public
  Pancancer related code and aux. data.

  R

  •

  GNU Lesser General Public License v3.0

  •22 forks•44 stars•00 issues•00 pull requests•Updated May 3, 2017May 3, 2017

• TeachingMaterial

  Public
  RNA-seq data analysis practical

  4444 forks•22 stars•00 issues•00 pull requests•Updated Nov 26, 2015Nov 26, 2015