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    17 repositories

    • hap-ibd

      Public
      The hap-ibd program detects identity-by-descent segments in phased genotype data.
      Java
      •10•0•0•2•Updated Sep 19, 2025Sep 19, 2025

    • GERMLINE

      Public
      Linear time detection of Identity by Descent
      C++
      •7•0•0•1•Updated Nov 4, 2024Nov 4, 2024

    • iaap-genotype-calling

      Public
      Python
      •0•1•0•0•Updated Feb 19, 2024Feb 19, 2024

    • flytekit

      Public archive
      Extensible Python SDK for developing Flyte tasks and workflows. Simple to get started and learn and highly extensible.
      Python
      •
      Apache License 2.0
      •332•0•0•2•Updated Oct 7, 2022Oct 7, 2022

    • DnaFeaturesViewer

      Public
      👁️ Python library to plot DNA sequence features (e.g. from Genbank files)
      Python
      •
      MIT License
      •103•0•0•0•Updated Aug 22, 2022Aug 22, 2022

    • embark-research

      Public
      Repository of code used in Embark publications.
      Python
      •
      GNU General Public License v3.0
      •0•1•0•1•Updated Jun 22, 2022Jun 22, 2022

    • flyte

      Public
      Kubernetes-native workflow automation platform for complex, mission-critical data and ML processes at scale. It has been battle-tested at Lyft, Spotify, Freenome, and others and is truly open-source.
      Python
      •
      Apache License 2.0
      •769•0•0•1•Updated Apr 11, 2022Apr 11, 2022

    • teal

      Public
      Sanger Trace Viewer
      JavaScript
      •
      GNU General Public License v3.0
      •2•0•0•0•Updated Feb 7, 2022Feb 7, 2022

    • helm-charts-public

      Public
      Smarty
      •
      Apache License 2.0
      •27•0•0•0•Updated Jan 28, 2022Jan 28, 2022

    • pr-labeler-action

      Public
      Automatically labels your PRs based on branch name patterns like feature/* or fix/*.
      TypeScript
      •
      MIT License
      •53•0•0•0•Updated Sep 26, 2021Sep 26, 2021

    • schemats

      Public
      Generate typescript interface definitions from SQL database schema
      TypeScript
      •
      MIT License
      •104•2•0•0•Updated Sep 16, 2021Sep 16, 2021

    • hail-on-AWS-spot-instances

      Public
      An option to spin cost effective EMR clusters in AWS with Hail and JupyterNotebook installed
      Python
      •
      Apache License 2.0
      •16•0•0•0•Updated May 21, 2021May 21, 2021

    • aws-cost-explorer-report

      Public
      Python SAM Lambda module for generating an Excel cost report with graphs, including month on month cost changes. Uses the AWS Cost Explorer API for data.
      Python
      •
      MIT No Attribution
      •170•0•0•0•Updated Apr 26, 2021Apr 26, 2021

    • pbwt

      Public
      Implementation of Positional Burrows-Wheeler Transform for genetic data
      C
      •41•0•0•0•Updated Oct 6, 2020Oct 6, 2020

    • gs1-128-encoder

      Public archive
      A GS1-128 barcode encoder module for JavaScript or TypeScript
      TypeScript
      •3•0•0•0•Updated Jan 21, 2020Jan 21, 2020

    • s4cmd

      Public
      Super S3 command line tool
      Python
      •
      Apache License 2.0
      •212•0•0•0•Updated Apr 13, 2018Apr 13, 2018

    • rfmix

      Public archive
      RFMIX - Local Ancestry and Admixture Inference Version 2
      C++
      •28•0•0•0•Updated Nov 22, 2017Nov 22, 2017