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chore(deps): update dependency snakemake to v9.13.2 #6304

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Merged
echoix merged 1 commit into from
Oct 12, 2025
Merged

chore(deps): update dependency snakemake to v9.13.2 #6304

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2 changes: 1 addition & 1 deletion Dockerfile
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Original file line number Diff line number Diff line change
Expand Up @@ -337,7 +337,7 @@ ARG GEM_RUBOCOP_RSPEC_VERSION=3.7.0
# renovate: datasource=npm depName=@salesforce/sfdx-scanner
ARG SALESFORCE_SFDX_SCANNER_VERSION=4.12.0
# renovate: datasource=pypi depName=snakemake
ARG PIP_SNAKEMAKE_VERSION=9.11.9
ARG PIP_SNAKEMAKE_VERSION=9.13.2
# renovate: datasource=pypi depName=snakefmt
ARG PIP_SNAKEFMT_VERSION=0.11.2
# renovate: datasource=npm depName=cspell
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2 changes: 1 addition & 1 deletion flavors/c_cpp/Dockerfile
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Expand Up @@ -152,7 +152,7 @@ ARG REPOSITORY_TRIVY_VERSION=0.67.0
# renovate: datasource=github-tags depName=aquasecurity/trivy
ARG REPOSITORY_TRIVY_SBOM_VERSION=0.67.0
# renovate: datasource=pypi depName=snakemake
ARG PIP_SNAKEMAKE_VERSION=9.11.9
ARG PIP_SNAKEMAKE_VERSION=9.13.2
# renovate: datasource=pypi depName=snakefmt
ARG PIP_SNAKEFMT_VERSION=0.11.2
# renovate: datasource=npm depName=cspell
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2 changes: 1 addition & 1 deletion flavors/documentation/Dockerfile
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Expand Up @@ -150,7 +150,7 @@ ARG REPOSITORY_TRIVY_VERSION=0.67.0
# renovate: datasource=github-tags depName=aquasecurity/trivy
ARG REPOSITORY_TRIVY_SBOM_VERSION=0.67.0
# renovate: datasource=pypi depName=snakemake
ARG PIP_SNAKEMAKE_VERSION=9.11.9
ARG PIP_SNAKEMAKE_VERSION=9.13.2
# renovate: datasource=pypi depName=snakefmt
ARG PIP_SNAKEFMT_VERSION=0.11.2
# renovate: datasource=npm depName=cspell
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2 changes: 1 addition & 1 deletion flavors/dotnet/Dockerfile
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Expand Up @@ -176,7 +176,7 @@ ARG REPOSITORY_TRIVY_VERSION=0.67.0
# renovate: datasource=github-tags depName=aquasecurity/trivy
ARG REPOSITORY_TRIVY_SBOM_VERSION=0.67.0
# renovate: datasource=pypi depName=snakemake
ARG PIP_SNAKEMAKE_VERSION=9.11.9
ARG PIP_SNAKEMAKE_VERSION=9.13.2
# renovate: datasource=pypi depName=snakefmt
ARG PIP_SNAKEFMT_VERSION=0.11.2
# renovate: datasource=npm depName=cspell
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2 changes: 1 addition & 1 deletion flavors/dotnetweb/Dockerfile
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Expand Up @@ -212,7 +212,7 @@ ARG REPOSITORY_TRIVY_VERSION=0.67.0
# renovate: datasource=github-tags depName=aquasecurity/trivy
ARG REPOSITORY_TRIVY_SBOM_VERSION=0.67.0
# renovate: datasource=pypi depName=snakemake
ARG PIP_SNAKEMAKE_VERSION=9.11.9
ARG PIP_SNAKEMAKE_VERSION=9.13.2
# renovate: datasource=pypi depName=snakefmt
ARG PIP_SNAKEFMT_VERSION=0.11.2
# renovate: datasource=npm depName=cspell
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2 changes: 1 addition & 1 deletion flavors/go/Dockerfile
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Expand Up @@ -160,7 +160,7 @@ ARG REPOSITORY_TRIVY_VERSION=0.67.0
# renovate: datasource=github-tags depName=aquasecurity/trivy
ARG REPOSITORY_TRIVY_SBOM_VERSION=0.67.0
# renovate: datasource=pypi depName=snakemake
ARG PIP_SNAKEMAKE_VERSION=9.11.9
ARG PIP_SNAKEMAKE_VERSION=9.13.2
# renovate: datasource=pypi depName=snakefmt
ARG PIP_SNAKEFMT_VERSION=0.11.2
# renovate: datasource=npm depName=cspell
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2 changes: 1 addition & 1 deletion flavors/java/Dockerfile
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Expand Up @@ -162,7 +162,7 @@ ARG REPOSITORY_TRIVY_VERSION=0.67.0
# renovate: datasource=github-tags depName=aquasecurity/trivy
ARG REPOSITORY_TRIVY_SBOM_VERSION=0.67.0
# renovate: datasource=pypi depName=snakemake
ARG PIP_SNAKEMAKE_VERSION=9.11.9
ARG PIP_SNAKEMAKE_VERSION=9.13.2
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@cursor cursor bot Oct 12, 2025

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Bug: Version Mismatch in PR Title and Code

The PR's title and description indicate updating snakemake to v9.13.1, but the code consistently updates it to v9.13.2. This version mismatch can cause confusion for reviewers and may lead to unexpected behavior or deployment issues.

Additional Locations (3)

Fix in Cursor Fix in Web

# renovate: datasource=pypi depName=snakefmt
ARG PIP_SNAKEFMT_VERSION=0.11.2
# renovate: datasource=npm depName=cspell
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2 changes: 1 addition & 1 deletion flavors/javascript/Dockerfile
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Expand Up @@ -190,7 +190,7 @@ ARG REPOSITORY_TRIVY_VERSION=0.67.0
# renovate: datasource=github-tags depName=aquasecurity/trivy
ARG REPOSITORY_TRIVY_SBOM_VERSION=0.67.0
# renovate: datasource=pypi depName=snakemake
ARG PIP_SNAKEMAKE_VERSION=9.11.9
ARG PIP_SNAKEMAKE_VERSION=9.13.2
# renovate: datasource=pypi depName=snakefmt
ARG PIP_SNAKEFMT_VERSION=0.11.2
# renovate: datasource=npm depName=cspell
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2 changes: 1 addition & 1 deletion flavors/php/Dockerfile
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Expand Up @@ -164,7 +164,7 @@ ARG REPOSITORY_TRIVY_VERSION=0.67.0
# renovate: datasource=github-tags depName=aquasecurity/trivy
ARG REPOSITORY_TRIVY_SBOM_VERSION=0.67.0
# renovate: datasource=pypi depName=snakemake
ARG PIP_SNAKEMAKE_VERSION=9.11.9
ARG PIP_SNAKEMAKE_VERSION=9.13.2
# renovate: datasource=pypi depName=snakefmt
ARG PIP_SNAKEFMT_VERSION=0.11.2
# renovate: datasource=npm depName=cspell
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2 changes: 1 addition & 1 deletion flavors/python/Dockerfile
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Expand Up @@ -180,7 +180,7 @@ ARG PIP_RSTCHECK_CLICK_VERSION=8.3.0
# renovate: datasource=pypi depName=rstfmt
ARG PIP_RSTFMT_VERSION=0.0.14
# renovate: datasource=pypi depName=snakemake
ARG PIP_SNAKEMAKE_VERSION=9.11.9
ARG PIP_SNAKEMAKE_VERSION=9.13.2
# renovate: datasource=pypi depName=snakefmt
ARG PIP_SNAKEFMT_VERSION=0.11.2
# renovate: datasource=npm depName=cspell
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2 changes: 1 addition & 1 deletion flavors/ruby/Dockerfile
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Expand Up @@ -162,7 +162,7 @@ ARG GEM_RUBOCOP_RAKE_VERSION=0.7.1
# renovate: datasource=rubygems depName=rubocop-rspec
ARG GEM_RUBOCOP_RSPEC_VERSION=3.7.0
# renovate: datasource=pypi depName=snakemake
ARG PIP_SNAKEMAKE_VERSION=9.11.9
ARG PIP_SNAKEMAKE_VERSION=9.13.2
# renovate: datasource=pypi depName=snakefmt
ARG PIP_SNAKEFMT_VERSION=0.11.2
# renovate: datasource=npm depName=cspell
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2 changes: 1 addition & 1 deletion flavors/rust/Dockerfile
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Original file line number Diff line number Diff line change
Expand Up @@ -150,7 +150,7 @@ ARG REPOSITORY_TRIVY_VERSION=0.67.0
# renovate: datasource=github-tags depName=aquasecurity/trivy
ARG REPOSITORY_TRIVY_SBOM_VERSION=0.67.0
# renovate: datasource=pypi depName=snakemake
ARG PIP_SNAKEMAKE_VERSION=9.11.9
ARG PIP_SNAKEMAKE_VERSION=9.13.2
# renovate: datasource=pypi depName=snakefmt
ARG PIP_SNAKEFMT_VERSION=0.11.2
# renovate: datasource=npm depName=cspell
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2 changes: 1 addition & 1 deletion flavors/salesforce/Dockerfile
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Expand Up @@ -162,7 +162,7 @@ ARG REPOSITORY_TRIVY_SBOM_VERSION=0.67.0
# renovate: datasource=npm depName=@salesforce/sfdx-scanner
ARG SALESFORCE_SFDX_SCANNER_VERSION=4.12.0
# renovate: datasource=pypi depName=snakemake
ARG PIP_SNAKEMAKE_VERSION=9.11.9
ARG PIP_SNAKEMAKE_VERSION=9.13.2
# renovate: datasource=pypi depName=snakefmt
ARG PIP_SNAKEFMT_VERSION=0.11.2
# renovate: datasource=npm depName=cspell
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2 changes: 1 addition & 1 deletion flavors/swift/Dockerfile
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Expand Up @@ -150,7 +150,7 @@ ARG REPOSITORY_TRIVY_VERSION=0.67.0
# renovate: datasource=github-tags depName=aquasecurity/trivy
ARG REPOSITORY_TRIVY_SBOM_VERSION=0.67.0
# renovate: datasource=pypi depName=snakemake
ARG PIP_SNAKEMAKE_VERSION=9.11.9
ARG PIP_SNAKEMAKE_VERSION=9.13.2
# renovate: datasource=pypi depName=snakefmt
ARG PIP_SNAKEFMT_VERSION=0.11.2
# renovate: datasource=npm depName=cspell
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2 changes: 1 addition & 1 deletion flavors/terraform/Dockerfile
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Expand Up @@ -164,7 +164,7 @@ ARG REPOSITORY_TRIVY_VERSION=0.67.0
# renovate: datasource=github-tags depName=aquasecurity/trivy
ARG REPOSITORY_TRIVY_SBOM_VERSION=0.67.0
# renovate: datasource=pypi depName=snakemake
ARG PIP_SNAKEMAKE_VERSION=9.11.9
ARG PIP_SNAKEMAKE_VERSION=9.13.2
# renovate: datasource=pypi depName=snakefmt
ARG PIP_SNAKEFMT_VERSION=0.11.2
# renovate: datasource=npm depName=cspell
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2 changes: 1 addition & 1 deletion linters/snakemake_lint/Dockerfile
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Expand Up @@ -49,7 +49,7 @@ FROM python:3.13-alpine3.22
#############################################################################################
#ARG__START
# renovate: datasource=pypi depName=snakemake
ARG PIP_SNAKEMAKE_VERSION=9.11.9
ARG PIP_SNAKEMAKE_VERSION=9.13.2
# renovate: datasource=pypi depName=pip
ARG PIP_PIP_VERSION=25.2
# renovate: datasource=pypi depName=virtualenv
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2 changes: 1 addition & 1 deletion megalinter/descriptors/snakemake.megalinter-descriptor.yml
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Expand Up @@ -39,7 +39,7 @@ linters:
dockerfile:
- |-
# renovate: datasource=pypi depName=snakemake
ARG PIP_SNAKEMAKE_VERSION=9.11.9
ARG PIP_SNAKEMAKE_VERSION=9.13.2
pip:
- snakemake==${PIP_SNAKEMAKE_VERSION}
ide:
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