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@pangenome

pangenome

graphical pangenomic methods

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  1. pggb pggb Public

    the pangenome graph builder

    Shell 471 45

  2. odgi odgi Public

    Optimized Dynamic Genome/Graph Implementation: understanding pangenome graphs

    C++ 228 43

  3. impg impg Public

    implicit pangenome graph

    Rust 86 10

  4. smoothxg smoothxg Public

    linearize and simplify variation graphs using blocked partial order alignment

    C++ 59 8

Repositories

Showing 10 of 81 repositories
  • impg Public

    implicit pangenome graph

    pangenome/impg’s past year of commit activity
    Rust 86 MIT 10 0 2 Updated Jan 10, 2026
  • povu Public

    A toolkit for exploring regions of variation in a variation graph

    pangenome/povu’s past year of commit activity
    C++ 12 MIT 3 2 2 Updated Jan 9, 2026
  • sweepga Public

    plane sweep filtering genome alignments

    pangenome/sweepga’s past year of commit activity
    Rust 16 MIT 0 1 0 Updated Jan 7, 2026
  • allwave Public

    simple interface for all-way alignment with biWFA

    pangenome/allwave’s past year of commit activity
    Rust 2 MIT 0 0 10 Updated Jan 5, 2026
  • odgi Public

    Optimized Dynamic Genome/Graph Implementation: understanding pangenome graphs

    pangenome/odgi’s past year of commit activity
    C++ 228 MIT 43 54 (1 issue needs help) 5 Updated Jan 3, 2026
  • gfalook Public

    GFA visualization tool - Rust reimplementation of odgi viz

    pangenome/gfalook’s past year of commit activity
    Rust 8 MIT 0 0 0 Updated Dec 21, 2025
  • fastga-rs Public

    fastga rust library

    pangenome/fastga-rs’s past year of commit activity
    Rust 1 MIT 0 0 0 Updated Dec 20, 2025
  • gfasort Public

    Rust library and CLI for sorting bidirected pangenome graphs using configurable pipelines (path-guided SGD, grooming, topological sort)

    pangenome/gfasort’s past year of commit activity
    Rust 0 MIT 0 0 0 Updated Dec 12, 2025
  • seqwish Public

    alignment to variation graph inducer

    pangenome/seqwish’s past year of commit activity
    C++ 156 MIT 20 32 4 Updated Dec 10, 2025
  • HPRCv2 Public

    pangenome alignment, implicit/explicit graph, and variants for human pangenome project release 2

    pangenome/HPRCv2’s past year of commit activity
    R 16 MIT 1 0 1 Updated Dec 10, 2025
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