Development

.dockerignore

@@ -10,7 +10,7 @@ notebook.ipynb
 Dockerfile
 Dockerfile_base
 Dockerfile_dev
-node_modules
+webapp/node_modules
 webapp/build
 webapp/geppetto-client
 workspace
@@ -23,4 +23,5 @@ app.log
 /.pytest_cache
 .jupyter-config
 **/*.pyc
-**/__pycache__
+**/__pycache__
+app.log

.github/workflows/tests.yml

@@ -0,0 +1,258 @@
+# name: Tests Workflow
+
+# # Controls when the workflow will run
+# on:
+#   # Triggers the workflow on push or pull request events but only for the specified branch
+#   push:
+#     branches:
+#      - "master"
+#      - "development"
+#   pull_request:
+#     branches:
+#      - "master"
+#      - "development"
+
+# # A workflow run is made up of one or more jobs that can run sequentially or in parallel
+# jobs: 
+#   EEG_Dipole-test:
+#     # The type of runner that the job will run on
+#     runs-on: ubuntu-20.04
+#     container: lironavon/docker-puppeteer-container:14.16.0
+#     env:
+#       CI: true
+#     steps:
+#     - uses: actions/checkout@v1
+#     - name: Use Node.js ${{ matrix.node-version }}
+#       uses: actions/setup-node@v1
+#       with:
+#           node-version: ${{ matrix.node-version }}
+#           cache-dependency-path: frontend/e2e/tests/package-lock.json
+#     - name: EEG and Dipole Plot snapshot test using Tut#1
+#       run: |
+#           cd tests/frontend/e2e
+#           #install dependencies
+#           npm ci
+#           # run EEG and Dipole Plot test
+#           npm run EEG_Dipole_test
+#       env:
+#           CI: true
+#   Experiment_Manager-test:
+#     # The type of runner that the job will run on
+#     runs-on: ubuntu-20.04
+#     container: lironavon/docker-puppeteer-container:14.16.0
+#     env:
+#       CI: true
+#     steps:
+#     - uses: actions/checkout@v1
+#     - name: Use Node.js ${{ matrix.node-version }}
+#       uses: actions/setup-node@v1
+#       with:
+#           node-version: ${{ matrix.node-version }}
+#           cache-dependency-path: frontend/e2e/tests/package-lock.json
+#     - name: Experiment Manager snapshot test using Tut#1
+#       run: |
+#           cd tests/frontend/e2e
+#           #install dependencies
+#           npm ci
+#           # run Experiment Manager test
+#           npm run Experiment_Manager_test
+#       env:
+#           CI: true
+#   Control_Panel-test:
+#     # The type of runner that the job will run on
+#     runs-on: ubuntu-20.04
+#     container: lironavon/docker-puppeteer-container:14.16.0
+#     env:
+#       CI: true
+#     steps:
+#     - uses: actions/checkout@v1
+#     - name: Use Node.js ${{ matrix.node-version }}
+#       uses: actions/setup-node@v1
+#       with:
+#           node-version: ${{ matrix.node-version }}
+#           cache-dependency-path: frontend/e2e/tests/package-lock.json
+#     - name: Control Panel test using Tut#2
+#       run: |
+#           cd tests/frontend/e2e
+#           #install dependencies
+#           npm ci
+#           # run Control Panel test
+#           npm run Control_Panel_test
+#       env:
+#           CI: true
+#   Save_and_Open_File-test:
+#     # The type of runner that the job will run on
+#     runs-on: ubuntu-20.04
+#     container: lironavon/docker-puppeteer-container:14.16.0
+#     env:
+#       CI: true
+#     steps:
+#     - uses: actions/checkout@v1
+#     - name: Use Node.js ${{ matrix.node-version }}
+#       uses: actions/setup-node@v1
+#       with:
+#           node-version: ${{ matrix.node-version }}
+#           cache-dependency-path: frontend/e2e/tests/package-lock.json
+#     - name: Test for Opening and Saving a file
+#       run: |
+#           cd tests/frontend/e2e
+#           #install dependencies
+#           npm ci
+#           # run Control Panel test
+#           npm run Save_Open_File_test
+#       env:
+#           CI: true
+#   RxD-test:
+#     # The type of runner that the job will run on
+#     runs-on: ubuntu-20.04
+#     container: lironavon/docker-puppeteer-container:14.16.0
+#     env:
+#       CI: true
+#     steps:
+#     - uses: actions/checkout@v1
+#     - name: Use Node.js ${{ matrix.node-version }}
+#       uses: actions/setup-node@v1
+#       with:
+#           node-version: ${{ matrix.node-version }}
+#           cache-dependency-path: frontend/e2e/tests/package-lock.json
+#     - name: Test for RxD plot
+#       run: |
+#           cd tests/frontend/e2e
+#           #install dependencies
+#           npm ci
+#           # run RxD Plot test
+#           npm run RxD_test
+#       env:
+#           CI: true
+#   Tutorial_1-SmokeTest:
+#     # The type of runner that the job will run on
+#     runs-on: ubuntu-20.04
+#     container: lironavon/docker-puppeteer-container:14.16.0
+#     env:
+#       CI: true
+#     steps:
+#     - uses: actions/checkout@v1
+#     - name: Use Node.js ${{ matrix.node-version }}
+#       uses: actions/setup-node@v1
+#       with:
+#           node-version: ${{ matrix.node-version }}
+#           cache-dependency-path: frontend/e2e/tests/package-lock.json
+#     - name: Tutorial 1 Plot Tests
+#       run: |
+#           cd tests/frontend/e2e
+#           #install dependencies
+#           npm ci
+#           # run Tutorial 1 Plot Tests
+#           npm run Tutorial_1_test
+#       env:
+#           CI: true
+#   Tutorial_2-SmokeTest:
+#     # The type of runner that the job will run on
+#     runs-on: ubuntu-20.04
+#     container: lironavon/docker-puppeteer-container:14.16.0
+#     env:
+#       CI: true
+#     steps:
+#     - uses: actions/checkout@v1
+#     - name: Use Node.js ${{ matrix.node-version }}
+#       uses: actions/setup-node@v1
+#       with:
+#           node-version: ${{ matrix.node-version }}
+#           cache-dependency-path: frontend/e2e/tests/package-lock.json
+#     - name: Tutorial 2 Plot Tests
+#       run: |
+#           cd tests/frontend/e2e
+#           #install dependencies
+#           npm ci
+#           # run Tutorial 2 Plot Tests
+#           npm run Tutorial_2_test
+#       env:
+#           CI: true
+#   Tutorial_3a-SmokeTest:
+#     # The type of runner that the job will run on
+#     runs-on: ubuntu-20.04
+#     container: lironavon/docker-puppeteer-container:14.16.0
+#     env:
+#       CI: true
+#     steps:
+#     - uses: actions/checkout@v1
+#     - name: Use Node.js ${{ matrix.node-version }}
+#       uses: actions/setup-node@v1
+#       with:
+#           node-version: ${{ matrix.node-version }}
+#           cache-dependency-path: frontend/e2e/tests/package-lock.json
+#     - name: Tutorial 3a Plot Tests
+#       run: |
+#           cd tests/frontend/e2e
+#           #install dependencies
+#           npm ci
+#           # run Tutorial 3a Plot Tests
+#           npm run Tutorial_3A_test
+#       env:
+#           CI: true
+#   Tutorial_3b-SmokeTest:
+#     # The type of runner that the job will run on
+#     runs-on: ubuntu-20.04
+#     container: lironavon/docker-puppeteer-container:14.16.0
+#     env:
+#       CI: true
+#     steps:
+#     - uses: actions/checkout@v1
+#     - name: Use Node.js ${{ matrix.node-version }}
+#       uses: actions/setup-node@v1
+#       with:
+#           node-version: ${{ matrix.node-version }}
+#           cache-dependency-path: frontend/e2e/tests/package-lock.json
+#     - name: Tutorial 3b Plot Tests
+#       run: |
+#           cd tests/frontend/e2e
+#           #install dependencies
+#           npm ci
+#           # run Tutorial 3b Plot Tests
+#           npm run Tutorial_3B_test
+#       env:
+#           CI: true
+#   Tutorial_3c-SmokeTest:
+#     # The type of runner that the job will run on
+#     runs-on: ubuntu-20.04
+#     container: lironavon/docker-puppeteer-container:14.16.0
+#     env:
+#       CI: true
+#     steps:
+#     - uses: actions/checkout@v1
+#     - name: Use Node.js ${{ matrix.node-version }}
+#       uses: actions/setup-node@v1
+#       with:
+#           node-version: ${{ matrix.node-version }}
+#           cache-dependency-path: frontend/e2e/tests/package-lock.json
+#     - name: Tutorial 3c Plot Tests
+#       run: |
+#           cd tests/frontend/e2e
+#           #install dependencies
+#           npm ci
+#           # run Tutorial 3c Plot Tests
+#           npm run Tutorial_3C_test
+#       env:
+#           CI: true
+#   Tutorial_4-SmokeTest:
+#     # The type of runner that the job will run on
+#     runs-on: ubuntu-20.04
+#     container: lironavon/docker-puppeteer-container:14.16.0
+#     env:
+#       CI: true
+#     steps:
+#     - uses: actions/checkout@v1
+#     - name: Use Node.js ${{ matrix.node-version }}
+#       uses: actions/setup-node@v1
+#       with:
+#           node-version: ${{ matrix.node-version }}
+#           cache-dependency-path: frontend/e2e/tests/package-lock.json
+#     - name: Tutorial 4 Plot Tests
+#       run: |
+#           cd tests/frontend/e2e
+#           #install dependencies
+#           npm ci
+#           # run Tutorial 4 Plot Tests
+#           npm run Tutorial_4_test
+#       env:
+#           CI: true

.gitignore

@@ -13,6 +13,7 @@ init.py
 webapp/node_modules
 webapp/geppetto-client
 webapp/build
+webapp/.yalc
 workspace
 netpyne_workspace
 tests/frontend/e2e/node_modules
@@ -24,4 +25,10 @@ utilities/x86_64
 .idea
 *.iml
 x86_64
-.jupyter-config
+.jupyter-config
+venv
+webapp/build
+webapp/.yalc
+node_modules
+sa_nyhead.mat
+workspace