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Issues with genotypic vs phenotypic results. Focuses on O8 antigen

Status: Open.

#65 In phac-nml/sistr_cmd;

· TM-ROBERTS opened on Nov 13, 2025

ERROR logging enabled by default?

Status: Open.

#64 In phac-nml/sistr_cmd;

· russellsmithies opened on Sep 24, 2025

cgMLST cluster level is never used to make the overall serovar call

Status: Open.

#63 In phac-nml/sistr_cmd;

· Sofie-Hofman opened on Jul 22, 2025

SISTR predicting serotype V 66:z81:- on Salmonella bongori

Status: Open.

#62 In phac-nml/sistr_cmd;

· cimendes opened on Jul 18, 2025

sistr 1.1.3 uses pkg_resource that is deprecated

Status: Open.

#61 In phac-nml/sistr_cmd;

· atks opened on Dec 26, 2024

Question about result output meanings (serovar, serovar antigen, serovar cgmlst)

Status: Open.

#56 In phac-nml/sistr_cmd;

· Dogrinev opened on Feb 16, 2023

Some of Paratyphi A serogroup were assigned as "D1" in SISTR

Status: Open.

#55 In phac-nml/sistr_cmd;

· Wang-Jing-NZ opened on Sep 1, 2022

IndexError: index 0 is out of bounds for axis 0 with size 0

Status: Open.

#53 In phac-nml/sistr_cmd;

· sheikki opened on Feb 3, 2022

O51 antigen prediction issues and 35|O51 wzx allele in SISTR v1.1.1 database

Status: Open.

#52 In phac-nml/sistr_cmd;

· kbessonov1984 opened on Dec 20, 2021

choosing between sistr prediction and refseq match

Status: Open.

#50 In phac-nml/sistr_cmd;

· vappiah opened on Oct 23, 2021

Check D1 and D2 serogroup predictions being accurate

enhancement

Status: Open.

#49 In phac-nml/sistr_cmd;

· kbessonov1984 opened on Aug 10, 2021

Add testing coverage for SISTR codebase

Status: Open.

#38 In phac-nml/sistr_cmd;

· jrober84 opened on Aug 8, 2019