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phyloref / phyx.js Public

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Add support for using phylorefs as specifiers#73

Draft

gaurav wants to merge 22 commits intomasterphyloref/phyx.js:masterfrom

phyloref-as-specifierphyloref/phyx.js:phyloref-as-specifierCopy head branch name to clipboard

Conversation Commits22 (22)Checks Files changed

Draft

Add support for using phylorefs as specifiers#73
gaurav wants to merge 22 commits intomasterfrom
phyloref-as-specifier

Commits

Commits on Feb 9, 2021

Added phylorefType to Brochu 2003 example.
gaurav
committed
Added phyloref type generation and to expected JSON-LD and NQ output.
gaurav
committed
Removed phyloref:MalformedPhyloreference.
gaurav
committed
Added possible phylorefTypes to the JSON Schema.
gaurav
committed
Rewrote examples to handle any number of example files.
gaurav
committed
Fixed `cladeDefinition` to `definition` in example.
gaurav
committed
Changed the base URI for brochu_2003 example to reuse it for all tests.
gaurav
committed
Fixed schema: should require `definition`, not `cladeDefinition`.
gaurav
committed
Improved baseURI, simplified unnecessary code.
gaurav
committed
Added Testudinata as an apomorphy-based phyloref example.
gaurav
committed
Added code for generating JSON-LD for apomorphy-based phylorefs.
gaurav
committed
feat: Display list of JSON Schema violations.
gaurav
committed
Added phyloref:Phyloreference as superclass to apomorphy-based phylorefs
gaurav
committed
Fixed some JSON Schema validation errors.
gaurav
committed
Regenerated expected JSON-LD and NQ files.
gaurav
committed
Reduced JPhyloRef test requirements.
gaurav
committed
Added an exactMatch field to record a reference to another ontology.
gaurav
committed

Commits on Feb 10, 2021

feat: We now preserve references to TUs/phylorefs in logical expressions
gaurav
committed
Expanded taxonomic units to support IDs.
gaurav
committed
Added example file that uses a phyloref as a specifier.
gaurav
committed
Removed overlong commented-out debugging line.
gaurav
committed
Removed incorrectly duplicated phyloreference.
gaurav
committed

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