Add pre-commit

.codespellrc

@@ -0,0 +1,2 @@
+[codespell]
+ignore-words-list = precice

.github/workflows/check-pep8.yml

@@ -11,7 +11,7 @@ jobs:
     runs-on: ubuntu-latest
     steps:
       - uses: actions/checkout@v2
-      - name: autopep8 
+      - name: autopep8
         id: autopep8
         uses: peter-evans/autopep8@v1
         with:

.github/workflows/release.yml

@@ -38,4 +38,4 @@ jobs:
           name: dist
           path: dist
       - name: Publish package distributions to PyPI
-        uses: pypa/gh-action-pypi-publish@release/v1
+        uses: pypa/gh-action-pypi-publish@release/v1

.github/workflows/run-solverdummy.yml

@@ -36,4 +36,4 @@ jobs:
       - name: Run solverdummies
         run: |
           cd examples/solverdummy/
-          python3 solverdummy.py precice-config.xml SolverOne & python3 solverdummy.py precice-config.xml SolverTwo
+          python3 solverdummy.py precice-config.xml SolverOne & python3 solverdummy.py precice-config.xml SolverTwo

.pre-commit-config.yaml

@@ -0,0 +1,33 @@
+repos:
+# Official repo for the clang-format hook
+- repo: https://github.com/pre-commit/mirrors-clang-format
+  rev: 'v20.1.0'
+  hooks:
+  - id: clang-format
+    name: format C/C++
+    types_or: [c++]
+# Official repo for default hooks
+- repo: https://github.com/pre-commit/pre-commit-hooks
+  rev: 'v5.0.0'
+  hooks:
+  - id: check-merge-conflict
+  - id: mixed-line-ending
+  - id: trailing-whitespace
+    args: [--markdown-linebreak-ext=md]
+  - id: end-of-file-fixer
+# black repo for python formatting
+- repo: https://github.com/ambv/black
+  rev: 25.1.0
+  hooks:
+    - id: black
+      name: format python
+- repo: https://github.com/codespell-project/codespell
+  rev: v2.4.1
+  hooks:
+    - id: codespell
+      name: check spelling
+- repo: https://github.com/python-jsonschema/check-jsonschema
+  rev: 0.33.2
+  hooks:
+    - id: check-github-workflows
+      args: ["--verbose"]

CHANGELOG.md

@@ -82,7 +82,7 @@ All notable changes to this project will be documented in this file.
 
 ## 2.2.0.2
 
-* Improved error messgaes for all assertions. https://github.com/precice/python-bindings/pull/9
+* Improved error messages for all assertions. https://github.com/precice/python-bindings/pull/9
 * Improve CI w.r.t spack package. https://github.com/precice/python-bindings/pull/89
 
 ## 2.2.0.1
@@ -118,7 +118,7 @@ All notable changes to this project will be documented in this file.
 
 ## 2.0.0.2
 
-* Improvement of PyPI intergration.
+* Improvement of PyPI integration.
 
 ## 2.0.0.1
 

README.md

@@ -69,7 +69,7 @@ If preCICE (the C++ library) was installed in a custom prefix, or only built but
 * `LIBRARY_PATH`, `LD_LIBRARY_PATH` to the library location, or `$prefix/lib`
 * `CPATH` either to the `src` directory or the `$prefix/include`
 
-The preCICE documentation provides more informaiton on [linking preCICE](https://precice.org/installation-linking.html).
+The preCICE documentation provides more information on [linking preCICE](https://precice.org/installation-linking.html).
 
 ### Using Spack
 

cyprecice/Participant.pxd

@@ -74,7 +74,7 @@ cdef extern from "precice/precice.hpp" namespace "precice":
         void readData (const string& meshName, const string& dataName, vector[int] vertices, const double relativeReadTime, vector[double]& values) except +
 
         # Just-in-time mapping
-        
+
         void writeAndMapData (const string& meshName, const string& dataName, vector[double] coordinates, vector[double] values) except +
 
         void mapAndReadData  (const string& meshName, const string& dataName, vector[double] coordinates, double relativeReadTime, vector[double]& values) except +

cyprecice/cyprecice.pyx

@@ -272,7 +272,7 @@ cdef class Participant:
         Returns
         -------
         tag : bool
-            Returns True if inital data is required.
+            Returns True if initial data is required.
 
         Notes
         -----
@@ -284,10 +284,10 @@ cdef class Participant:
     def requires_writing_checkpoint (self):
         """
         Checks if the participant is required to write an iteration checkpoint.
-        
+
         If true, the participant is required to write an iteration checkpoint before
         calling advance().
-        
+
         preCICE refuses to proceed if writing a checkpoint is required,
         but this method isn't called prior to advance().
 
@@ -1062,7 +1062,7 @@ cdef class Participant:
         vertex_ids : array_like
             Indices of the vertices.
         gradients : array_like
-             Gradient values differentiated in the spacial direction (dx, dy) for 2D space, (dx, dy, dz) for 3D space
+             Gradient values differentiated in the spatial direction (dx, dy) for 2D space, (dx, dy, dz) for 3D space
 
         Notes
         -----
@@ -1117,7 +1117,7 @@ cdef class Participant:
 
     def requires_gradient_data_for(self, mesh_name, data_name):
         """
-        Checks if the given data set requires gradient data. We check if the data object has been intialized with the gradient flag.
+        Checks if the given data set requires gradient data. We check if the data object has been initialized with the gradient flag.
 
         Parameters
         ----------
@@ -1229,7 +1229,7 @@ cdef class Participant:
     def start_profiling_section(self, event_name):
         """
         Starts a profiling section with the given event name.
-        
+
         Parameters
         ----------
         event_name : str
@@ -1239,7 +1239,7 @@ cdef class Participant:
         --------
         Start a profiling section with the event name "EventOne":
         >>> event_name = "EventOne"
-        >>> participant.start_profiling_section(event_name)    
+        >>> participant.start_profiling_section(event_name)
         """
         self.thisptr.startProfilingSection(convert(event_name))
 

docs/ReleaseGuide.md

@@ -43,16 +43,16 @@ The release of the `python-bindings` repository is made directly from a release
       commit 44b715dde4e3194fa69e61045089ca4ec6925fe3 (HEAD -> master, origin/master)
       Author: Benjamin Rodenberg <benjamin.rodenberg@in.tum.de>
       Date:   Wed Oct 20 10:52:41 2021 +0200
-   
+
           post-tag bump
-   
+
       commit d2645cc51f84ad5eda43b9c673400aada8e1505a (tag: v2.3.0.1)
       Merge: 2039557 aca2354
       Author: Benjamin Rodenberg <benjamin.rodenberg@in.tum.de>
       Date:   Tue Oct 19 12:57:24 2021 +0200
-   
+
           Merge pull request #132 from precice/python-bindings-v2.3.0.1
-   
+
           Release v2.3.0.1
       ```
 

examples/solverdummy/solverdummy.py

@@ -5,8 +5,9 @@
 import precice
 
 parser = argparse.ArgumentParser()
-parser.add_argument("configurationFileName",
-                    help="Name of the xml config file.", type=str)
+parser.add_argument(
+    "configurationFileName", help="Name of the xml config file.", type=str
+)
 parser.add_argument("participantName", help="Name of the solver.", type=str)
 
 try:
@@ -19,29 +20,34 @@
 configuration_file_name = args.configurationFileName
 participant_name = args.participantName
 
-if participant_name == 'SolverOne':
-    write_data_name = 'Data-One'
-    read_data_name = 'Data-Two'
-    mesh_name = 'SolverOne-Mesh'
+if participant_name == "SolverOne":
+    write_data_name = "Data-One"
+    read_data_name = "Data-Two"
+    mesh_name = "SolverOne-Mesh"
 
-if participant_name == 'SolverTwo':
-    read_data_name = 'Data-One'
-    write_data_name = 'Data-Two'
-    mesh_name = 'SolverTwo-Mesh'
+if participant_name == "SolverTwo":
+    read_data_name = "Data-One"
+    write_data_name = "Data-Two"
+    mesh_name = "SolverTwo-Mesh"
 
 num_vertices = 3  # Number of vertices
 
 solver_process_index = 0
 solver_process_size = 1
 
-participant = precice.Participant(participant_name, configuration_file_name,
-                                  solver_process_index, solver_process_size)
+participant = precice.Participant(
+    participant_name, configuration_file_name, solver_process_index, solver_process_size
+)
 
-assert (participant.requires_mesh_connectivity_for(mesh_name) is False)
+assert participant.requires_mesh_connectivity_for(mesh_name) is False
 
 vertices = np.zeros((num_vertices, participant.get_mesh_dimensions(mesh_name)))
-read_data = np.zeros((num_vertices, participant.get_data_dimensions(mesh_name, read_data_name)))
-write_data = np.zeros((num_vertices, participant.get_data_dimensions(mesh_name, write_data_name)))
+read_data = np.zeros(
+    (num_vertices, participant.get_data_dimensions(mesh_name, read_data_name))
+)
+write_data = np.zeros(
+    (num_vertices, participant.get_data_dimensions(mesh_name, write_data_name))
+)
 
 for x in range(num_vertices):
     for y in range(participant.get_mesh_dimensions(mesh_name)):

setup.py

@@ -31,7 +31,7 @@ def get_extensions():
     compile_args += pkgconfig.cflags("libprecice").split()
 
     if os.environ.get(MOCKED_ENV) is not None:
-        print(f"Builing mocked pyprecice as {MOCKED_ENV} is set")
+        print(f"Building mocked pyprecice as {MOCKED_ENV} is set")
         bindings_sources.append("test/Participant.cpp")
     else:
         link_args += pkgconfig.libs("libprecice").split()