Missing extracellular compartment in exported models #4
Description
A related question (but we can migrate this to a new Issue if you prefer): your paper mentions adding transport reactions from cytosol to extracellular space when necessary. But the SBML models (whether from write_models_sbml.m or write_models_sbml_raw.m) only have one compartment, cytosol (though some of the metabolite names still have the "[e]" suffix). Do you know if the lack of an extracellular compartment is an exporting error, or was it necessary/intentional?
Originally posted by @zoey-rw in #2 (comment)