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Issue #2457 make jupyter a dev only dependency#2846

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valentinsulzer merged 16 commits intopybamm-team:developfrom
arjxn-py:Issue-#2457-Make-jupyter-a-dev-only-dependency
Apr 3, 2023
Merged

Issue #2457 make jupyter a dev only dependency#2846
valentinsulzer merged 16 commits intopybamm-team:developfrom
arjxn-py:Issue-#2457-Make-jupyter-a-dev-only-dependency

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@arjxn-py arjxn-py commented Apr 1, 2023

Description

Made jupyter a development only dependency instead of required dependency.

Fixes #2457

Type of change

Jupyter has been moved from required dependency to development only dependency in requirements.txt & setup.py and also been added as a testing dependency in tox.ini.

  • New feature (non-breaking change which adds functionality)
  • Optimization (back-end change that speeds up the code)
  • Bug fix (non-breaking change which fixes an issue)

Key checklist:

  • No style issues: $ pre-commit run (see CONTRIBUTING.md for how to set this up to run automatically when committing locally, in just two lines of code)
  • All tests pass: $ python run-tests.py --all
  • The documentation builds: $ python run-tests.py --doctest

You can run unit and doctests together at once, using $ python run-tests.py --quick.

Further checks:

  • Code is commented, particularly in hard-to-understand areas
  • Tests added that prove fix is effective or that feature works

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codecov Bot commented Apr 1, 2023

Codecov Report

Patch and project coverage have no change.

Comparison is base (08dc8f7) 99.69% compared to head (ba89a07) 99.69%.

Additional details and impacted files
@@           Coverage Diff            @@
##           develop    #2846   +/-   ##
========================================
  Coverage    99.69%   99.69%           
========================================
  Files          273      273           
  Lines        19065    19065           
========================================
  Hits         19006    19006           
  Misses          59       59           

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arjxn-py commented Apr 1, 2023

@tinosulzer I have listed the packages that were dependent on Jupyter in required dependencies but now the tests are failing while running example notebooks most likely on this line - %pip install pybamm -q giving syntax error.
I would be grateful If I could get some suggestion on it.

@valentinsulzer
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you should install jupyter in tox.ini before running the example tests

@arjxn-py arjxn-py marked this pull request as draft April 1, 2023 14:59
@arjxn-py arjxn-py marked this pull request as ready for review April 2, 2023 08:38
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arjxn-py commented Apr 2, 2023

@tinosulzer Thankfully, almost all the tests are passing now. Though i'm not sure about the Lynchee one.

Comment thread setup.py Outdated
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won't jupyter install nbconvert (i.e. no need to make explicit)

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arjxn-py commented Apr 2, 2023

won't jupyter install nbconvert (i.e. no need to make explicit)

I listed it to avoid the potential risk to examples tests failing, but yes jupyter should install nbconvert with it so I am looking into it.
Thanks for suggesting.

Comment thread tox.ini Outdated
Comment thread setup.py Outdated
Co-authored-by: Saransh Chopra <saransh0701@gmail.com>
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arjxn-py commented Apr 3, 2023

One of the integration test is failing but I don't think I've made any changes in that regard.

@arjxn-py arjxn-py requested a review from Saransh-cpp April 3, 2023 06:39
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Thanks, @arjxn-py! Looks good to me!

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Can you update changelog (add this as a breaking change)?

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arjxn-py commented Apr 3, 2023

Can you update changelog (add this as a breaking change)?

Yes i'll do that.

@valentinsulzer valentinsulzer merged commit 87c0696 into pybamm-team:develop Apr 3, 2023
@arjxn-py arjxn-py deleted the Issue-#2457-Make-jupyter-a-dev-only-dependency branch May 6, 2023 05:46
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Make jupyter a dev-only dependency

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