[Documentation] Extend documentation for debugging submission commands

[jan-janssen]

The documentation in docs/trouble_shooting.md was updated to include a new section titled "Debugging Submission Command". This section provides guidance on how to handle and troubleshoot errors that occur when submitting jobs to a queuing system (like Slurm). Key additions include:

• Explanation of how submission errors are captured and raised as exceptions (e.g., subprocess.CalledProcessError).
• Warning about potential hangs in interactive environments like Jupyter notebooks when background submission threads fail.
• Instructions for manual debugging by inspecting the input HDF5 files (_i.h5) in the cache directory.
• Guidance on using the error_log_file option in resource_dict to capture detailed stack traces for failed tasks.

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PR created automatically by Jules for task 4419427271094377417 started by @jan-janssen

Summary by CodeRabbit

Documentation

• Added troubleshooting section explaining how job submission failures are surfaced and providing guidance on debugging via cache inspection and error log files.

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[coderabbitai]

📝 Walkthrough

Walkthrough

Adds a new "Debugging Submission Command" section to the troubleshooting guide, documenting how HPC Job Executor submission failures are surfaced through future.result(), debugging via executorlib cache inspection, and error logging using the error_log_file resource setting.

Changes

Cohort / File(s)	Summary
Troubleshooting Documentation docs/trouble_shooting.md	Adds "Debugging Submission Command" section covering HPC Job Executor error handling, executorlib cache inspection techniques, and error_log_file configuration for task execution error logging with full stack traces.

Estimated code review effort

🎯 1 (Trivial) | ⏱️ ~2 minutes

Possibly related PRs

• Update Documentation #558: Also modifies docs/trouble_shooting.md to update HPC executor terminology and documentation links alongside this new debugging section.
• add notebook to explain testing and debug capabilities #751: Updates documentation and notebook content explaining debugging and error-logging capabilities for executor frameworks.

Poem

🐰✨ A troublesome task? Fear not, my friend!
Our guide now shows where problems end,
With cache inspections and error logs clear,
Debugging submission? You've got nothing to fear! 🔍📝

🚥 Pre-merge checks | ✅ 3

✅ Passed checks (3 passed)

Check name	Status	Explanation
Description Check	✅ Passed	Check skipped - CodeRabbit’s high-level summary is enabled.
Docstring Coverage	✅ Passed	No functions found in the changed files to evaluate docstring coverage. Skipping docstring coverage check.
Title check	✅ Passed	The title clearly and directly summarizes the main change: adding documentation for debugging submission commands in the troubleshooting guide.

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✨ Finishing Touches

📝 Generate docstrings

• Create stacked PR
• Commit on current branch

🧪 Generate unit tests (beta)

• Create PR with unit tests
• Commit unit tests in branch debug-submission-doc-4419427271094377417

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[Copilot]

Pull request overview

Updates the troubleshooting documentation to better support diagnosing failures when submitting jobs via the HPC Job Executor (e.g., Slurm/pysqa), including how errors surface and what artifacts to inspect in the cache.

Changes:

• Added a “Debugging Submission Command” section describing how submission errors are raised via future.result().
• Documented debugging via cache inspection and the _i.h5/HDF5 artifacts.
• Added guidance and an example for using error_log_file to collect stack traces from failed tasks.

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[codecov]

Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 94.15%. Comparing base (0829868) to head (e36ede5).
⚠️ Report is 2 commits behind head on main.

Additional details and impacted files

@@           Coverage Diff           @@
##             main     #969   +/-   ##
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  Coverage   94.15%   94.15%           
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  Files          39       39           
  Lines        2089     2089           
=======================================
  Hits         1967     1967           
  Misses        122      122           

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