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traveling around the sun
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traveling around the sun
20 followers · 23 following

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raysas/readme.md

i like coding and biology. i also like math :)

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🎓 Im a Computational Biology MSc student at Université Paris-Saclay
🎓 B.Sc. in Bioinformatics from Lebanese American University, class of '24

My main interests lie in building tools merging multi-modal biological data towards a systems level understanding of molecular processes on human traits and diseases

$\rightarrow$ Trying to learn nextflow and graph representation learning
$\rightarrow$ Attempting to build computational packages, models & pipelines for biological data (NGS mainly)
$\rightarrow$ I like learning new things and taking notes

Computational topics:
deep learning, statistical/machine learning, network science, representation learning, explainable AI

Bioinformatics interests:
systems biology, omics data integration, single-cell and spatial transcriptomics, epigenomics and neurogenomics

Technical:
python packaging, cmd pipelines, R data analysis

Python R Linux Ubuntu HPC slurm Git
Nextflow Docker Conda Jupyter PostgreSQL NumPy Pandas Scikit-Learn PyTorch TensorFlow BioPython Plotly networkx Tidyverse LaTeX

Pinned Loading

  1. RNAr-structural-library RNAr-structural-library Public

    Forked from rna-oop/2425-m1-geniomhe-group-6

    python library allowing easy manipulation, reading, writing and transforming RNA structures to study

    Jupyter Notebook

  2. pangenomicGxG-network pangenomicGxG-network Public

    statistically inferred gene epistatic interactions network model - BSc capstone project 2024

    Jupyter Notebook

  3. parallel-naive-dna-aligner parallel-naive-dna-aligner Public

    practicing parallel programming in c on the naive dna alignment (motif search) problem

    C

  4. modelling-project modelling-project Public

    agent-based tumor growth and immune interaction model implementation and simulation analysis

    NetLogo 1

  5. simple-HMM-toy simple-HMM-toy Public

    Hidden Markov Model implemented from scratch for the 5′ splice-site recognition problem

    Python

  6. neural-nets-library neural-nets-library Public

    Forked from deeplearning-oop/2425-m1geniomhe-group-1

    che3le: ANN python library implementation from scratch using object-oriented programming principles

    Python 1